Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g0393 | ATGTCATCGTCGATTTCACCGTGTGCGGCGTGCAAACTCCGGAGGCAAAAATGCACACAAGAATGCGTATTCGCTCCTTATTTCCCACCGGACCAGCCACAGAAATTCGCTAACGTCCACAAAGTATTCGGCGCAAGCAACGTGGCGAAGCTTTTGAGCGAACTGAACGCAACGCAGCGGGAGGACGCAGTGAACTCATTAGCCTACGAGGCGGAGTTCCGTTTGCGTGACCCTGTGTACGGCTGCGTGGGCCTCATCTCACTCCTCCAACACAAGCTCAAGCAAATGCAAAGCGATCTCTACAATGCCAAAAAGGAACTCGCCTCTTACATTGGCCCCCAAGCCATGCTCCCAATTCTCCAGCCTCCCACCGCCATCATGGCCCCGCAAGCCGGCAGCCCTTCCTCCTCCGCCGTCCTCCCCTACAACATGTCCGGGATTCCCCCTTCTGCCGGTGGCTCCTCTCAGCAGATGCTCATCCGCGACTCGCCCCAGCAACACCACCAAATGCAGCAGCAGCAACAGCAACAGCTGTTCGAGGCCCAGCAGTTGGCTGTGGCCGTGGCCGCCAGAGAGCAGCAGGAAATGTTTAGAGCTTACGAGCAGAAACAAACCCAACAGCACCATCATTCTCAACGCCAACACGAGCTTTTGAGGTTCAATGGGTTCGACCCGGCTGGGACTGGCGGTGGCGGCGGGGGGTTTAATCAAATGAATTCGGCGTCTAATTTGACATTGGGGACTTTTGTTGATAATAGCTACCAAATTCAAACGCAACCTGAACATTCACATTCGCATTCTCATCACCATCATCAGCAGCAGCTTCCAGTACAGCTTTTTCTTCAACCTCAACAAACACAAGTCGAGCAACAGCTGCAACAACAGCCCCATCAACACCAATCGCAGCAAACCCAGAAGCCTGAAGCCACTGCAGATGATGGTAGGAATATTAATATCGCTCCATCTTGTTAA | 972 | 53.4 | MSSSISPCAACKLRRQKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLSELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISLLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPPTAIMAPQAGSPSSSAVLPYNMSGIPPSAGGSSQQMLIRDSPQQHHQMQQQQQQQLFEAQQLAVAVAAREQQEMFRAYEQKQTQQHHHSQRQHELLRFNGFDPAGTGGGGGGFNQMNSASNLTLGTFVDNSYQIQTQPEHSHSHSHHHHQQQLPVQLFLQPQQTQVEQQLQQQPHQHQSQQTQKPEATADDGRNINIAPSC | 323 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 12067168 | 12068139 | + | Maker00011387 | Lcy8g0393 | 639285 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g0393 | 323 | Coils | Coil | 86 | 106 | - | - | |
| Lcy8g0393 | 323 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
| Lcy8g0393 | 323 | MobiDBLite | consensus disorder prediction | 285 | 323 | - | - | |
| Lcy8g0393 | 323 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 212 | - | - | |
| Lcy8g0393 | 323 | MobiDBLite | consensus disorder prediction | 285 | 311 | - | - | |
| Lcy8g0393 | 323 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy8g0393 | Lcy-Chr8:12067168 | Lcy8g1638 | Lcy-Chr8:42979317 | 4.96E-41 | dispersed | |
| Lcy8g0393 | Lcy-Chr8:12067168 | Lcy8g0396 | Lcy-Chr8:12210198 | 4.92E-79 | proximal | |
| Lcy10g0181 | Lcy-Chr10:2497599 | Lcy8g0393 | Lcy-Chr8:12067168 | 1.68E-45 | wgd | |
| Lcy11g0522 | Lcy-Chr11:12170869 | Lcy8g0393 | Lcy-Chr8:12067168 | 1.36E-26 | wgd | |
| Lcy4g0786 | Lcy-Chr4:9452814 | Lcy8g0393 | Lcy-Chr8:12067168 | 2.36E-40 | wgd | |
| Lcy4g1549 | Lcy-Chr4:39163632 | Lcy8g0393 | Lcy-Chr8:12067168 | 2.23E-54 | wgd | |
| Lcy8g0393 | Lcy-Chr8:12067168 | Lcy9g0581 | Lcy-Chr9:18811423 | 1.02E-95 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20469 | None | None | None | None | Lcy | TF |
Pathway information