Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0393 ATGTCATCGTCGATTTCACCGTGTGCGGCGTGCAAACTCCGGAGGCAAAAATGCACACAAGAATGCGTATTCGCTCCTTATTTCCCACCGGACCAGCCACAGAAATTCGCTAACGTCCACAAAGTATTCGGCGCAAGCAACGTGGCGAAGCTTTTGAGCGAACTGAACGCAACGCAGCGGGAGGACGCAGTGAACTCATTAGCCTACGAGGCGGAGTTCCGTTTGCGTGACCCTGTGTACGGCTGCGTGGGCCTCATCTCACTCCTCCAACACAAGCTCAAGCAAATGCAAAGCGATCTCTACAATGCCAAAAAGGAACTCGCCTCTTACATTGGCCCCCAAGCCATGCTCCCAATTCTCCAGCCTCCCACCGCCATCATGGCCCCGCAAGCCGGCAGCCCTTCCTCCTCCGCCGTCCTCCCCTACAACATGTCCGGGATTCCCCCTTCTGCCGGTGGCTCCTCTCAGCAGATGCTCATCCGCGACTCGCCCCAGCAACACCACCAAATGCAGCAGCAGCAACAGCAACAGCTGTTCGAGGCCCAGCAGTTGGCTGTGGCCGTGGCCGCCAGAGAGCAGCAGGAAATGTTTAGAGCTTACGAGCAGAAACAAACCCAACAGCACCATCATTCTCAACGCCAACACGAGCTTTTGAGGTTCAATGGGTTCGACCCGGCTGGGACTGGCGGTGGCGGCGGGGGGTTTAATCAAATGAATTCGGCGTCTAATTTGACATTGGGGACTTTTGTTGATAATAGCTACCAAATTCAAACGCAACCTGAACATTCACATTCGCATTCTCATCACCATCATCAGCAGCAGCTTCCAGTACAGCTTTTTCTTCAACCTCAACAAACACAAGTCGAGCAACAGCTGCAACAACAGCCCCATCAACACCAATCGCAGCAAACCCAGAAGCCTGAAGCCACTGCAGATGATGGTAGGAATATTAATATCGCTCCATCTTGTTAA 972 53.4 MSSSISPCAACKLRRQKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLSELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISLLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPPTAIMAPQAGSPSSSAVLPYNMSGIPPSAGGSSQQMLIRDSPQQHHQMQQQQQQQLFEAQQLAVAVAAREQQEMFRAYEQKQTQQHHHSQRQHELLRFNGFDPAGTGGGGGGFNQMNSASNLTLGTFVDNSYQIQTQPEHSHSHSHHHHQQQLPVQLFLQPQQTQVEQQLQQQPHQHQSQQTQKPEATADDGRNINIAPSC 323
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 12067168 12068139 + Maker00011387 Lcy8g0393 639285
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0393 323 Coils Coil 86 106 - -
Lcy8g0393 323 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lcy8g0393 323 MobiDBLite consensus disorder prediction 285 323 - -
Lcy8g0393 323 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 212 - -
Lcy8g0393 323 MobiDBLite consensus disorder prediction 285 311 - -
Lcy8g0393 323 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0393 Lcy-Chr8:12067168 Lcy8g1638 Lcy-Chr8:42979317 4.96E-41 dispersed
Lcy8g0393 Lcy-Chr8:12067168 Lcy8g0396 Lcy-Chr8:12210198 4.92E-79 proximal
Lcy10g0181 Lcy-Chr10:2497599 Lcy8g0393 Lcy-Chr8:12067168 1.68E-45 wgd
Lcy11g0522 Lcy-Chr11:12170869 Lcy8g0393 Lcy-Chr8:12067168 1.36E-26 wgd
Lcy4g0786 Lcy-Chr4:9452814 Lcy8g0393 Lcy-Chr8:12067168 2.36E-40 wgd
Lcy4g1549 Lcy-Chr4:39163632 Lcy8g0393 Lcy-Chr8:12067168 2.23E-54 wgd
Lcy8g0393 Lcy-Chr8:12067168 Lcy9g0581 Lcy-Chr9:18811423 1.02E-95 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20469 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0393 - - - 0.0