Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g0396 | ATGTCATCGTCGAATTCACCATGTGCGGCGTGCAAATTCCTGAGGCGAAAATGCACACAAGAATGCGTGTTCGCTCCTTATTTCCCACCGGATCAGCCACAGAAATTCGCGAACGTCCACAAGGTATTCGGCGCAAGCAACGTGGCGAAGCTTTTGAACGAACTGAACGCAACGCAGCGGGAGGACGCAGTGAACTCATTAGCCTACGAGGCGGAGTTCCGTTTGCGTGACCCTGTGTACGGCTGCGTGGGCCTCATCTCACTCCTCCAACACAAGCTCAAGCAAATGCAAAGCGATCTCTACAATGCCAAAAAGGAACTCGCCTCTTACATTGGCCCTCAAGCCATGCTCCCAATGGCCCCGCAAGGCGCCAGCCCTTCCTCCGTCCTCTCCTACAACATGTCAATTTGGTGTTTTCTGAATCAAGAAGGGCATTTTGACATAGGTTCTGATCTCGATGCATTGGTCGAGTTAGAAATAATTGGGATCATTAATCTTGCTGGCTTTTCCAGTAGGAGTTGTAGACCACCGTCACATTCACCAGAGCCGCTGCTCACTGCCGTTCACCGTCGTCGGAGCCGTCGGCCGCCTGCAACGCACGCGAATCCACCGCCGGATCTGCAACACCCACATGAATCCGCCGCCGCTACCTGCAACGCACGAACTTCCCTTGCAATGAAACCCAGATCCGGGGAGCGGTGGAAATCCCCAAAATACCCAGTTGACTGGCGCGATCGTTGCAGCATCTCCCGCGTTCGCAGCATCTCTAGCAGCACCCAGTCACCAGATCTGCAACACCCACAGAATACCCACTCCTCGCGAATCTTCGATTGGTAG | 837 | 54.12 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISLLQHKLKQMQSDLYNAKKELASYIGPQAMLPMAPQGASPSSVLSYNMSIWCFLNQEGHFDIGSDLDALVELEIIGIINLAGFSSRSCRPPSHSPEPLLTAVHRRRSRRPPATHANPPPDLQHPHESAAATCNARTSLAMKPRSGERWKSPKYPVDWRDRCSISRVRSISSSTQSPDLQHPQNTHSSRIFDW | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 12210198 | 12217085 | + | Maker00011361 | Lcy8g0396 | 639288 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g0396 | 278 | Coils | Coil | 86 | 106 | - | - | |
Lcy8g0396 | 278 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 191 | - | - | |
Lcy8g0396 | 278 | MobiDBLite | consensus disorder prediction | 254 | 278 | - | - | |
Lcy8g0396 | 278 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
Lcy8g0396 | 278 | MobiDBLite | consensus disorder prediction | 190 | 214 | - | - | |
Lcy8g0396 | 278 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g1549 | Lcy-Chr4:39163632 | Lcy8g0396 | Lcy-Chr8:12210198 | 1.03E-56 | dispersed | |
Lcy5g2196 | Lcy-Chr5:45039484 | Lcy8g0396 | Lcy-Chr8:12210198 | 5.22E-48 | dispersed | |
Lcy8g0396 | Lcy-Chr8:12210198 | Lcy9g0581 | Lcy-Chr9:18811423 | 3.01E-72 | dispersed | |
Lcy8g0393 | Lcy-Chr8:12067168 | Lcy8g0396 | Lcy-Chr8:12210198 | 4.92E-79 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20470 | None | None | None | None | Lcy | TF |
Pathway information
