Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0396 ATGTCATCGTCGAATTCACCATGTGCGGCGTGCAAATTCCTGAGGCGAAAATGCACACAAGAATGCGTGTTCGCTCCTTATTTCCCACCGGATCAGCCACAGAAATTCGCGAACGTCCACAAGGTATTCGGCGCAAGCAACGTGGCGAAGCTTTTGAACGAACTGAACGCAACGCAGCGGGAGGACGCAGTGAACTCATTAGCCTACGAGGCGGAGTTCCGTTTGCGTGACCCTGTGTACGGCTGCGTGGGCCTCATCTCACTCCTCCAACACAAGCTCAAGCAAATGCAAAGCGATCTCTACAATGCCAAAAAGGAACTCGCCTCTTACATTGGCCCTCAAGCCATGCTCCCAATGGCCCCGCAAGGCGCCAGCCCTTCCTCCGTCCTCTCCTACAACATGTCAATTTGGTGTTTTCTGAATCAAGAAGGGCATTTTGACATAGGTTCTGATCTCGATGCATTGGTCGAGTTAGAAATAATTGGGATCATTAATCTTGCTGGCTTTTCCAGTAGGAGTTGTAGACCACCGTCACATTCACCAGAGCCGCTGCTCACTGCCGTTCACCGTCGTCGGAGCCGTCGGCCGCCTGCAACGCACGCGAATCCACCGCCGGATCTGCAACACCCACATGAATCCGCCGCCGCTACCTGCAACGCACGAACTTCCCTTGCAATGAAACCCAGATCCGGGGAGCGGTGGAAATCCCCAAAATACCCAGTTGACTGGCGCGATCGTTGCAGCATCTCCCGCGTTCGCAGCATCTCTAGCAGCACCCAGTCACCAGATCTGCAACACCCACAGAATACCCACTCCTCGCGAATCTTCGATTGGTAG 837 54.12 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISLLQHKLKQMQSDLYNAKKELASYIGPQAMLPMAPQGASPSSVLSYNMSIWCFLNQEGHFDIGSDLDALVELEIIGIINLAGFSSRSCRPPSHSPEPLLTAVHRRRSRRPPATHANPPPDLQHPHESAAATCNARTSLAMKPRSGERWKSPKYPVDWRDRCSISRVRSISSSTQSPDLQHPQNTHSSRIFDW 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12210198 12217085 + Maker00011361 Lcy8g0396 639288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0396 278 Coils Coil 86 106 - -
Lcy8g0396 278 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 191 - -
Lcy8g0396 278 MobiDBLite consensus disorder prediction 254 278 - -
Lcy8g0396 278 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lcy8g0396 278 MobiDBLite consensus disorder prediction 190 214 - -
Lcy8g0396 278 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1549 Lcy-Chr4:39163632 Lcy8g0396 Lcy-Chr8:12210198 1.03E-56 dispersed
Lcy5g2196 Lcy-Chr5:45039484 Lcy8g0396 Lcy-Chr8:12210198 5.22E-48 dispersed
Lcy8g0396 Lcy-Chr8:12210198 Lcy9g0581 Lcy-Chr9:18811423 3.01E-72 dispersed
Lcy8g0393 Lcy-Chr8:12067168 Lcy8g0396 Lcy-Chr8:12210198 4.92E-79 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20470 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0396 - - - 0.0