Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0554 ATGCAAATGGTGGTGAATTCATTCGACGTGGTGATGGGGTTCGGGGCGGCGGTGCCATACACGGCATTGGCGCAGAAGGCGATGTCGAGGCATTTCAGGTGTCTGAAGGACGCCATATCAGCGCAGCTGAAGCACAGCTGCGAGATGTTGGGCGAGAAAGATGGGGGAGCAGCTGGACGAGGCTCGGGAATCACAAAGGGAGAGACTCCAAGGCTTAAGCTCTTGGAGCAAAGCTTGAGGCAGCAACGAGCCTTCCACCAAATGGGCATGATGGAACAAGAAGCTTGGCGTCCCCAACGCGGCTTGCCCGAACGCTCTGTCAACATCTTGCGAGCCTGGCTCTTCGAGCATTTCCTTCACCCGTATCCTAGTGATGCTGATAAGCATTTGTTGGCTAGACAGACTGGTTTATCAAGAAATCAGACTGTCCATTGTCATCGACATACAGAAGCAGAAGCAGAAGCAGCTGCAGCAGCTGCTGATACTGCTGCTGCTCTTACCCTCTTCTGCCATTATTATGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAAGAAGATGATGACGATGATAATACAGATGAGGACAGAGAAACCAACCACCACCACCCACAAACCACGCCTCCAACGCCGCCCACTTCCACCGCTGCACCACCACCACCACCACCGCCGCCCTCCTCCGCCGCTCCACCACCCAAAAGACCCGATCATACCTCCGAAAACGACCCTTCGGCCTTCTCGCAAAACCAAGCAAATCAAAAGCATCAACAATATTCCTCCTCCTCCTCCGCCGCAACCCAGGCAGCGCCGCCTCCTCCGATGGTGGCGCACTGCTTTCCGGGCAGCCACTATGACTCAGACCTGCAGGACACGTGTCGGCGTGTCAGCGTTCTCGCTGCACCTGATCATCAATTCGGGACCACAAGCGGCTCTGCCACGTCTGACATCCAGGGGCCCACCACACTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCGCTCACACTAGGTTTACGCCACGCCGGCAACATCCCCGACAACAACCCTTCTTTCTCCCTCAGATCCGAGTTTGGAGGCTGTTAA 1125 55.29 MQMVVNSFDVVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCEMLGEKDGGAAGRGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQTVHCHRHTEAEAEAAAAAADTAAALTLFCHYYVSNWFINARVRLWKPMVEEMYQQEAKEDDDDDNTDEDRETNHHHPQTTPPTPPTSTAAPPPPPPPPSSAAPPPKRPDHTSENDPSAFSQNQANQKHQQYSSSSSAATQAAPPPPMVAHCFPGSHYDSDLQDTCRRVSVLAAPDHQFGTTSGSATSDIQGPTTLIRFGTTAGDVSLTLGLRHAGNIPDNNPSFSLRSEFGGC 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18942712 18948564 + Maker00009063 Lcy8g0554 639446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0554 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 236 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy8g0554 374 SUPERFAMILY Homeodomain-like 97 142 IPR009057 -
Lcy8g0554 374 Pfam Associated with HOX 1 40 IPR006563 -
Lcy8g0554 374 MobiDBLite consensus disorder prediction 219 246 - -
Lcy8g0554 374 MobiDBLite consensus disorder prediction 255 282 - -
Lcy8g0554 374 CDD homeodomain 96 189 IPR001356 GO:0003677(InterPro)
Lcy8g0554 374 SMART HOX_1 96 192 IPR001356 GO:0003677(InterPro)
Lcy8g0554 374 Pfam Homeobox KN domain 113 184 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy8g0554 374 Gene3D - 99 193 - -
Lcy8g0554 374 MobiDBLite consensus disorder prediction 196 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1054 Lcy-Chr1:9503233 Lcy8g0554 Lcy-Chr8:18942712 8.89E-19 dispersed
Lcy8g0554 Lcy-Chr8:18942712 Lcy8g1151 Lcy-Chr8:37816424 3.85E-61 dispersed
Lcy8g0554 Lcy-Chr8:18942712 Lcy5g2617 Lcy-Chr5:48927227 8.81E-56 transposed
Lcy8g0554 Lcy-Chr8:18942712 Lcy5g0494 Lcy-Chr5:5337893 8.81E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0554 - - - 0.0