Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0681 ATGGACGACATCGACATTCTGAAATCCTCCAGCGACCCGATCGACATGTCGTCCACAATCCTCCTCAACAACAATCCCCACTACTCTCCACTCCCCTTCAGCTTCTCCGAATTCTCATCTCCCTCCTTCTTCCACACCCCATCCTCCATCCCGGAGCCTCCGCCGCCGGTGCAGCAGAAACGAGGCGGCGGTGGCGGCGGAGGCATGGCCGCGATGAGAGAGATGATATTTCGAATAGCGGCGATGCAGCCCATACAGATAGACCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAACGTGAGGATCTCGAAGGACCCACAGAGCGTGGCGGCTCGGCACCGGCGGGAGAGGATCAGCCAGAAGATCAGGATCCTGCAGCGACTGGTCCCCGGCGGAACGAAGATGGACACGGCGTCGATGCTGGACGAGGCGGTTCATTACGTGAAGTTCTTGAAGAGGCAAGTGCAGACGCTGGAGCAGGCTGGGTTTCACAACACTAACACCAACGCCAACGCCACTTTTATGAATTGTGCCAATCTTACTTATTCTTCTGCGCTTTTGAAGGCTTGCCAAATGCCCCACAATCCAACCATGCCTGGTTCTTTGCAAATGCATTCATGA 621 56.52 MDDIDILKSSSDPIDMSSTILLNNNPHYSPLPFSFSEFSSPSFFHTPSSIPEPPPPVQQKRGGGGGGGMAAMREMIFRIAAMQPIQIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTNTNANATFMNCANLTYSSALLKACQMPHNPTMPGSLQMHS 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24954688 24955308 - Maker00028339 Lcy8g0681 639573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0681 206 CDD bHLH_AtIND_like 103 159 - -
Lcy8g0681 206 FunFam BHLH transcription factor 105 169 - -
Lcy8g0681 206 MobiDBLite consensus disorder prediction 44 68 - -
Lcy8g0681 206 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 56 191 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0681 206 Coils Coil 141 161 - -
Lcy8g0681 206 Pfam Helix-loop-helix DNA-binding domain 111 152 IPR011598 GO:0046983(InterPro)
Lcy8g0681 206 SMART finulus 108 157 IPR011598 GO:0046983(InterPro)
Lcy8g0681 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 151 IPR011598 GO:0046983(InterPro)
Lcy8g0681 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 161 IPR036638 GO:0046983(InterPro)
Lcy8g0681 206 Gene3D - 101 173 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2087 Lcy-Chr13:39848095 Lcy8g0681 Lcy-Chr8:24954688 3.49E-49 dispersed
Lcy1g1577 Lcy-Chr1:15809370 Lcy8g0681 Lcy-Chr8:24954688 5.43E-22 dispersed
Lcy3g2191 Lcy-Chr3:48815160 Lcy8g0681 Lcy-Chr8:24954688 6.30E-34 dispersed
Lcy5g1597 Lcy-Chr5:37581508 Lcy8g0681 Lcy-Chr8:24954688 2.28E-09 dispersed
Lcy6g0477 Lcy-Chr6:4499006 Lcy8g0681 Lcy-Chr8:24954688 5.41E-14 dispersed
Lcy8g0681 Lcy-Chr8:24954688 Lcy9g2042 Lcy-Chr9:45292387 1.16E-15 dispersed
Lcy1g1143 Lcy-Chr1:10686800 Lcy8g0681 Lcy-Chr8:24954688 3.84E-41 transposed
Lcy1g0979 Lcy-Chr1:8639937 Lcy8g0681 Lcy-Chr8:24954688 5.38E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20483 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0681 - - - 0.0