Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0721 ATGGATACCTTCTTCAGCCTGGTCTCTGATCTTCAGCCGTCCGATCAATCTTACAACTCCAGCAGAAACTCAAGCACCAGCTCAAAGAACTATTCTGCTGATCAAAATCATTGCTACCTTCAGCCACACCCAGAAGAATGCTTCAGCAGCTTGTTCATGGAGGATGAAGATCATTTCTCTGCAGCCTCCTCTTCTTCGAAGCAGCATAATCATCATCGTCACCGTCGTCATCCCTATCAACCCCAGCAGTTTCAATGCTCCGCCACCACGGCTAGTACTACTTCAACCGGTACTACAACTCCAACTGATCAATGGTTCTCCCCTTTTATCGGAGAGTTGAATTTCGAATTCTCTAATGATTGGGCCTCTACATTACTCCTCCAAGCAGCCATTGCCATTGTAGAAAACAACACTTCTCGAATCCAACAACTCATGTGGATGCTCAACGAGCTCGGTTCTCCCTACGGCGACGTTGATCAAAAGCTAGCTTTTTATTTCCTTCAAGCTATGTTTAGTCGTGTCACCGACTCCGGTGACCGATGCTACCGGACCTTGGCAGCAGTGTCGGAGAAGCGATCTTGTTTCGAGTCAATGAGAAGAATGGTGCTCAAGTTTGAGGAGGTGAGTCCTTGGATGACTTTTGGTCATGTTGCTTCCAATGGAGCGATCATGGAGGCTTTTGAAGGAGAAAAGAAGTTGCATATAATTGATATAAGCAACTCCTTTTGCACTCAATGGCCGACTTTTCTCGAAGCTCTGGCAACGCGATCAGACGAAACTCCGCACCTCAGGCTCACGACATTGGTCGCAACCAAATCGGACGGGAGCATTCGAGCTCATAAGAAGGTGATGAAAGAAATAAGTACAAGAATGGAGAAATTCGCCAGGCTTATGGGAGTTCCGTTCAAATTCAAAGCAATATTCCACTCCGGCGACGTTTCAGAGATAAATTTTACAGAATTAGGCGTCAAAGACGACGAGGCAGTCGCCATCAACTGCGTCGGCGCGTTACGCTCCGTCGCGCCGGTCGACAACCGCCGCGATTTTCTGATATCGCTGTTTGGAGCTCTGCGGCCGAGGATAATCACGGTGGTAGAGGAGGAGGCGGATCTCGACAGTGAAGGCGGCGGTGGCGTTGACTTTGTCAAAGAGGTTCAAGAGTGTTTACGGTGGTTTAGGGTTTACTTTGATTCGTTGGACGGAAGTTTTCCGACTGCCAGCGACGAGCAGTTGATGCTTGAACGAGCCGCCGGACGCGCCGTCGTGGATCTGCTGGCACGCGCCCCGGCGGAGTCTGTTGAGAGGCGCGAGACGGCGGCGCGTTGGGCGCGTCGTTTGCATGACGGTGGTTTCAATCCGGTCTCGTTCAGCGAGGATGTAAACGACGACGTACGAGCGCTTTTGAGGAGGTATAAGGACGGGTGGACGGTGACTGAGGACAAAGACGGCGCCGGAATATTCTTGGCTTGGAAGGAGCAACCGGTAGTTTGGGCCGCCGCATGGGCTCCTGGACCGCCGGACGGAGAAAAGAGTCGCCGGAGTAGTTCACCCGTGTGA 1557 51.38 MDTFFSLVSDLQPSDQSYNSSRNSSTSSKNYSADQNHCYLQPHPEECFSSLFMEDEDHFSAASSSSKQHNHHRHRRHPYQPQQFQCSATTASTTSTGTTTPTDQWFSPFIGELNFEFSNDWASTLLLQAAIAIVENNTSRIQQLMWMLNELGSPYGDVDQKLAFYFLQAMFSRVTDSGDRCYRTLAAVSEKRSCFESMRRMVLKFEEVSPWMTFGHVASNGAIMEAFEGEKKLHIIDISNSFCTQWPTFLEALATRSDETPHLRLTTLVATKSDGSIRAHKKVMKEISTRMEKFARLMGVPFKFKAIFHSGDVSEINFTELGVKDDEAVAINCVGALRSVAPVDNRRDFLISLFGALRPRIITVVEEEADLDSEGGGGVDFVKEVQECLRWFRVYFDSLDGSFPTASDEQLMLERAAGRAVVDLLARAPAESVERRETAARWARRLHDGGFNPVSFSEDVNDDVRALLRRYKDGWTVTEDKDGAGIFLAWKEQPVVWAAAWAPGPPDGEKSRRSSSPV 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26684055 26689015 - Maker00028380 Lcy8g0721 639613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0721 518 Pfam GRAS domain family 124 501 IPR005202 -
Lcy8g0721 518 MobiDBLite consensus disorder prediction 60 99 - -
Lcy8g0721 518 ProSiteProfiles GRAS family profile. 113 502 IPR005202 -
Lcy8g0721 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 501 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Lcy8g0721 518 MobiDBLite consensus disorder prediction 9 35 - -
Lcy8g0721 518 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0721 Lcy-Chr8:26684055 Lcy13g1039 Lcy-Chr13:22711472 5.10E-37 dispersed
Lcy1g0915 Lcy-Chr1:7976198 Lcy8g0721 Lcy-Chr8:26684055 8.50E-203 transposed
Lcy1g0926 Lcy-Chr1:8082961 Lcy8g0721 Lcy-Chr8:26684055 2.21E-45 transposed
Lcy3g1226 Lcy-Chr3:37763433 Lcy8g0721 Lcy-Chr8:26684055 1.28E-135 transposed
Lcy13g0936 Lcy-Chr13:17423307 Lcy8g0721 Lcy-Chr8:26684055 6.46E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20484 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0721 K27743 - csv:101210294 692.189