Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0729 ATGACACCTCATCGTTTGAGCTTCTTCTTTTCCTTTCTATCACTATTCACTACATTCATCACAGCCTTACCGCTTCTCCACCATTCCACCATTTCCTCCAGGAGGATTCTGCATCAGCCGCTCTTTCCGGTTGGGTCCGAGCCGCCGCCGGAAATTGACTTCCCGCCACCCCCGCCGCCGCCGGACTCTCCCTCCGACGACCAGCCCTTTTTCCATGAGCTGCCCACCAGTCCAGATCAGAGTCAACCGCCTCCCTCCTCTACCAATGGAACTATGCCAATCCCGGCTGCTACGGCGCAACCGTCCAAGCCCACGAAGACCGTTGCGATCGCCATTTCGGTTGGGATTGTGACTTTGGGGATGCTCTCTGCTCTCGCGTTCTTTCTCTATCGCCACCGGGCCAAGCATCCGGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATCAGGAGAGATTTGCGGAGGATTCCAGAGCGCCGCCGTCGAGTTTTTTCTATATTGGAACCGTGGAGCCCAGCCAGAGCTCTATTGTTGAGCAGAATGCTGCTAATGGTGCTAATAGTTCGCCGTATCGCAAGCTGAATTCGATTAAGAGGTCGGATCGGTACCGGCCGAGTCCGGAATTACAGCCACTGCCGCCTCTGCCGAAGCCGCCGATGGCTATGTCACCTCCCGCTCTTTCGTCTTCCGATGAGGAAAGCCAGGACACGGCATTTCATACTCCGCAATGCTCGTCGATTGTCAGTCACGACGATGGCTATTTCTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGCTCGACGGCGAGTTTTAAGAATGATCATATCAATTCCAATCCTCCTCCTATTCCTCATTCTAAAAGAACCTCTCCGAAATCGAGATTTTCCGTTTCATCGACGAAACGCAATTCATCTCAGCCTCAGCCACCGACGCCGCCGCCTCTTCCACCGCGTCCGGTTGATGACCTTCGTGAAACTCCAAATTCGAAAGAAACAATGCCTTTCTCTTCCACGAGACCTAAATTTTCGAAGCATCCGCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAGCCACATTTCCTCAGGTTCCGAAACCTGCTGCAGCTCCACCTCCACCTCCGCCTCCACCGCCCCCACCGCCACCTCCACGACCACCAGCGCGTCCAGTTTCTTATTCAACGCCACAAAAACTAGGGTTATCGGAAACCAGAATGCGTGCAGTCACTCCTCCAGATTCCTCTAAGTCACAGTCCTGCTCAGCAGCGAGATCAAACTCATCTTCCAAAGCAGCGAGATCAAACTCATCTTCCAAATCCCCACCGAGTTCTGCGACAGAAAATTCTGCTAAAGAAGATGTTGTCCAGAGGATTAATTCTATGGAGAGGCTTGAAGCAGAGGATCCAGAAGGTTCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGGGCAACCTCAGACCGAGCTACAGTCTGGGATCAACTGAAATCAAGCTCATTCCAATTAAATGAGGACATGATGGAGACACTTTTCGGCTTCAATTCTGCAAATTCTGTTCCAAAAGAGGTCACGAGGAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGACCCCAAAAAGTCGCAGAACATTGCAATACTCCTAAGAGCACTTAATGTCACGCGCGATGAGGTGATCGAAGCTCTTCAAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTTTTAGAAACTCTAGTAAAGATGGCTCCAACCAAAGAGGAAGAGATTAAACTCAGAGAGTACTGTGGTGATGTTTCAAAATTAGGGACTGCAGAAAGATTTCTCAAGTCAGTGCTTGAAGTCCCATTTGCCTTTAAAAGAGTCGAAGCCATGCTGTACAGAGCCAATTTTGATTCAGAAGTGAAGTACCTGAGGAAGTCATTCCAAACCCTTGAGGGTGCAAGTGAAGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTTAAGACAGGAAATAGGATGAACGTCGGTACGAATCGTGGTGACGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTAGATATAAAGGGAACAGATGGAAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATTATTAGATCGGAAGGTGGTGCTGATTCAACTAATGACACCCTTCAACCGCGTACGCAATCCAAAATCGAGGATGAATTTAGAAAGCAGGGCTTGCAGGTTGTGGCTGGACTAAGCAGAGACCTTAGCAATGTCAAAAAAGCAGCGGGTATGGACTCAGACGTATTGAGCAGTTATGTCACAAAGCTCGAAATGGGACTCGAAAAAGTAAGGTTGGTTTTGCAATTCGAGAAACCAGGGATGCAGGGAAAATTCTTCGACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAAGAAATAGTTAGGATCAAGGCCGACGAAAGGCAAGCTCTATCCCTTGTGAAAGGGGCGACAGAGTATTTCCATGGTGATGCTGCCAAGGAGGAAGCTCATCCCTTCCGAATCTTCATGATCGTTCGGGATTTCCTCACCATACTAGATCAAGTATGCAAAGAAGTCGGGAGAATGCAGGATGGAGTAATGGTGGGTGCTGCTAGATCCTTTCGGATATCGGCAACAGCCTCACTCCCAGTCCTCAGTAGATACAATGTCAGACACGACCAAAGCTCCGACGAGGATAGCTCATCTCCATGA 2748 48.73 MTPHRLSFFFSFLSLFTTFITALPLLHHSTISSRRILHQPLFPVGSEPPPEIDFPPPPPPPDSPSDDQPFFHELPTSPDQSQPPPSSTNGTMPIPAATAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNQERFAEDSRAPPSSFFYIGTVEPSQSSIVEQNAANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPMAMSPPALSSSDEESQDTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHINSNPPPIPHSKRTSPKSRFSVSSTKRNSSQPQPPTPPPLPPRPVDDLRETPNSKETMPFSSTRPKFSKHPPPPNLALLQTISNSATFPQVPKPAAAPPPPPPPPPPPPPPRPPARPVSYSTPQKLGLSETRMRAVTPPDSSKSQSCSAARSNSSSKAARSNSSSKSPPSSATENSAKEDVVQRINSMERLEAEDPEGSKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEVTRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDVSKLGTAERFLKSVLEVPFAFKRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDTLQPRTQSKIEDEFRKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFEKPGMQGKFFDSMKTFLKEAEEEIVRIKADERQALSLVKGATEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDQSSDEDSSSP 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26920107 26924975 + Maker00028297 Lcy8g0729 639621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0729 915 MobiDBLite consensus disorder prediction 138 158 - -
Lcy8g0729 915 Pfam Formin Homology 2 Domain 472 864 IPR015425 -
Lcy8g0729 915 SMART it6_source 469 879 IPR015425 -
Lcy8g0729 915 MobiDBLite consensus disorder prediction 307 322 - -
Lcy8g0729 915 PANTHER FORMIN-RELATED 8 910 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Lcy8g0729 915 MobiDBLite consensus disorder prediction 180 457 - -
Lcy8g0729 915 Coils Coil 811 831 - -
Lcy8g0729 915 Gene3D Formin, FH2 domain 462 875 IPR042201 -
Lcy8g0729 915 MobiDBLite consensus disorder prediction 368 394 - -
Lcy8g0729 915 ProSiteProfiles Formin homology-2 (FH2) domain profile. 469 890 IPR015425 -
Lcy8g0729 915 MobiDBLite consensus disorder prediction 45 103 - -
Lcy8g0729 915 MobiDBLite consensus disorder prediction 226 306 - -
Lcy8g0729 915 MobiDBLite consensus disorder prediction 45 66 - -
Lcy8g0729 915 MobiDBLite consensus disorder prediction 206 222 - -
Lcy8g0729 915 PRINTS Proline rich extensin signature 299 320 - -
Lcy8g0729 915 PRINTS Proline rich extensin signature 328 344 - -
Lcy8g0729 915 PRINTS Proline rich extensin signature 212 228 - -
Lcy8g0729 915 PRINTS Proline rich extensin signature 198 210 - -
Lcy8g0729 915 PRINTS Proline rich extensin signature 361 386 - -
Lcy8g0729 915 MobiDBLite consensus disorder prediction 411 457 - -
Lcy8g0729 915 MobiDBLite consensus disorder prediction 83 103 - -
Lcy8g0729 915 SUPERFAMILY Formin homology 2 domain (FH2 domain) 377 875 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2003 Lcy-Chr12:41424567 Lcy8g0729 Lcy-Chr8:26920107 3.83E-156 dispersed
Lcy8g0729 Lcy-Chr8:26920107 Lcy9g1230 Lcy-Chr9:36767636 7.79E-112 dispersed
Lcy13g2307 Lcy-Chr13:41958308 Lcy8g0729 Lcy-Chr8:26920107 3.53E-81 transposed
Lcy1g0919 Lcy-Chr1:8007738 Lcy8g0729 Lcy-Chr8:26920107 1.16E-32 transposed
Lcy2g2127 Lcy-Chr2:42702276 Lcy8g0729 Lcy-Chr8:26920107 5.89E-116 transposed
Lcy7g0217 Lcy-Chr7:1912084 Lcy8g0729 Lcy-Chr8:26920107 1.37E-82 transposed
Lcy7g1391 Lcy-Chr7:21760863 Lcy8g0729 Lcy-Chr8:26920107 2.23E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0729 K28090 - csv:101208011 1412.13