Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0730 ATGTGTGAGGCGCAGCTCCGGCGAGATTTCTACGCCGATGTCTGCCCTAACGTCGAGAGCATCGTCCGGAACGCCGTGAATAAGAAGTTCCAGCAGACTTTCGTTACCGTTCCAGCCACGCTCCGCCTCTTCTTCCACGACTGTTTCGTTCAGGGATGTGACGCATCGGTGTTGATTGCTTCAAGTGGAGGTAATACAGCAGAGAAGGATCATCCTGATAATCTTTCATTGGCCGGAGACGGGTTTGATACTGTAATCAAGGCCAAAGCCGCGGTTGACGCAGTGCCCGGATGTAGAAATAAAGTCTCTTGCGCGGATATTCTTGTCATGGCTACTCGGGATGTGATTTCATTGGCACGAGGACCTTCGTATGCGGTGGAGCTGGGGAGGAAGGATGGGTTTGTGTCGAGAGCTTCAGATGTGGAAGGGAAATTGCCTCAGCCGACCTTTAATCTCAACCAGCTCAATGCCTTGTTTGCTGCCAATGGCCTTTCTCAGACTGACATGATTGCTCTCTCTGCGGCACACACCGTGGGATTCTCCCATTGTGGAAAGTTCGCAAACAGAATCTACAATTTCAGCGCTAGAAATCCAGTGGACCCGACGCTGAATCCAACATACGCAGCGAAGCTTCAAGGAATGTGTCCAAGAGACGTCGATCCAAGGATAGCCATAGACATGGATCCAAACACCCCCAGAAAGTTCGACAACATGTACTTCAAGAATCTCCAGCAGGGAATGGGCCTTTTCACTTCCGACCAAGTCCTCTTCACCGACCCAAGGTCCAGGCCCACTGTCAAGGTCTGGGCCCACAGTGGTCAGACCTTCTACAAGGCCTTCATCGATGCCATGACCAAGTTGGGCCGGGTCGGAGTCAAGACCGGGTCCGACGGCAACATTCGCACTGATTGTGCCGCCACTACCGCTAGCCCTTCACGCAATTCTGACGGTCTTTCACAATCGGTTGCAGCTTTCTCCTTCTTTTCTTGTCTTTTTGTCTGGTTCGAATCATGGGTCACGGCGTTCGCTGCAAGTGGCTCGAGTTCATGGGCTGCAGCGATGACGAGTTTGGAGAAGTGTGAAGCAGATGACGGTGCGGCATCA 1104 52.45 MCEAQLRRDFYADVCPNVESIVRNAVNKKFQQTFVTVPATLRLFFHDCFVQGCDASVLIASSGGNTAEKDHPDNLSLAGDGFDTVIKAKAAVDAVPGCRNKVSCADILVMATRDVISLARGPSYAVELGRKDGFVSRASDVEGKLPQPTFNLNQLNALFAANGLSQTDMIALSAAHTVGFSHCGKFANRIYNFSARNPVDPTLNPTYAAKLQGMCPRDVDPRIAIDMDPNTPRKFDNMYFKNLQQGMGLFTSDQVLFTDPRSRPTVKVWAHSGQTFYKAFIDAMTKLGRVGVKTGSDGNIRTDCAATTASPSRNSDGLSQSVAAFSFFSCLFVWFESWVTAFAASGSSSWAAAMTSLEKCEADDGAAS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26949638 26954392 - Maker00028328 Lcy8g0730 639622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0730 368 PRINTS Plant peroxidase signature 80 93 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Plant peroxidase signature 120 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Plant peroxidase signature 15 34 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Plant peroxidase signature 101 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Plant peroxidase signature 242 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Plant peroxidase signature 226 241 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Plant peroxidase signature 282 295 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Plant peroxidase signature 167 179 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Plant peroxidase signature 39 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 Gene3D - 9 306 - -
Lcy8g0730 368 CDD secretory_peroxidase 5 307 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g0730 368 Pfam Peroxidase 22 271 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 SUPERFAMILY Heme-dependent peroxidases 5 306 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 Gene3D Peroxidase, domain 2 146 287 - -
Lcy8g0730 368 PANTHER - 3 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Haem peroxidase superfamily signature 37 51 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Haem peroxidase superfamily signature 120 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Haem peroxidase superfamily signature 228 243 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Haem peroxidase superfamily signature 102 119 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 PRINTS Haem peroxidase superfamily signature 168 183 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 FunFam Peroxidase 146 287 - -
Lcy8g0730 368 ProSitePatterns Peroxidases active site signature. 37 48 IPR019794 GO:0004601(InterPro)
Lcy8g0730 368 ProSiteProfiles Plant heme peroxidase family profile. 5 308 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g0730 368 FunFam Peroxidase 9 155 - -
Lcy8g0730 368 ProSitePatterns Peroxidases proximal heme-ligand signature. 168 178 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g1962 Lcy-Chr7:46171679 Lcy8g0730 Lcy-Chr8:26949638 2.27E-54 dispersed
Lcy8g0730 Lcy-Chr8:26949638 Lcy4g0570 Lcy-Chr4:6967612 6.08E-67 dispersed
Lcy1g0927 Lcy-Chr1:8088146 Lcy8g0730 Lcy-Chr8:26949638 5.03E-178 transposed
Lcy5g1849 Lcy-Chr5:41319113 Lcy8g0730 Lcy-Chr8:26949638 1.72E-78 transposed
Lcy9g1774 Lcy-Chr9:42933856 Lcy8g0730 Lcy-Chr8:26949638 1.92E-133 transposed
Lcy1g1007 Lcy-Chr1:8994019 Lcy8g0730 Lcy-Chr8:26949638 5.26E-57 wgd
Lcy7g1485 Lcy-Chr7:25733852 Lcy8g0730 Lcy-Chr8:26949638 1.95E-58 wgd
Lcy7g1452 Lcy-Chr7:24754636 Lcy8g0730 Lcy-Chr8:26949638 5.15E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0730 K00430 - csv:101208254 558.14