Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0773 ATGAAAGGGGGAGAAGAACGGAAGAATCAGCAGAATCAAAAACCGTACAAAGGCATAAGGATGAGAAAATGGGGGAAATGGGTCGCCGAGATTCGTGAGCCCAACAAACGCTCTAGAATTTGGCTCGGTTCCTACTCCTCCCCCGTCGCCGCCGCCCGGGCCTACGACACCGCCGTCTTCCACCTCCGCGGCCCCTCCGCCCGCCTCAATTTTCCCGACTTTTTCACCGCCGCCGACCGCCCCTTCCCCCTCCCCTCCGACATCTCCGCTGCCGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCGTGTCGACGCCCTCGAGACCTCCCTCCGCCACCACTTTCATACCTCTACAAACTCCGACCAAACTCCTTCCCCCTCGCCGGTGAAGCTTCGTTCTGATTCCGGTGGGTTTTCCGATCGGGTCGACCTGAATAAACTTCCCGACCCGGAAGACTCGGATGGCGACTGCGCTAGCACTCATTGGACTAGTTGA 498 60.44 MKGGEERKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPDFFTAADRPFPLPSDISAAAVRKIAAEVGARVDALETSLRHHFHTSTNSDQTPSPSPVKLRSDSGGFSDRVDLNKLPDPEDSDGDCASTHWTS 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28362107 28362604 + Maker00031197 Lcy8g0773 639665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0773 165 SMART rav1_2 15 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0773 165 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Lcy8g0773 165 CDD AP2 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0773 165 MobiDBLite consensus disorder prediction 115 133 - -
Lcy8g0773 165 MobiDBLite consensus disorder prediction 115 165 - -
Lcy8g0773 165 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0773 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 7 156 - -
Lcy8g0773 165 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677(InterPro)
Lcy8g0773 165 Pfam AP2 domain 16 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0773 165 MobiDBLite consensus disorder prediction 137 157 - -
Lcy8g0773 165 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0773 165 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0773 165 PRINTS Ethylene responsive element binding protein signature 54 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2098 Lcy-Chr13:39961287 Lcy8g0773 Lcy-Chr8:28362107 4.47E-48 dispersed
Lcy1g0975 Lcy-Chr1:8570647 Lcy8g0773 Lcy-Chr8:28362107 4.58E-59 dispersed
Lcy8g0773 Lcy-Chr8:28362107 Lcy9g2084 Lcy-Chr9:45577194 1.22E-50 dispersed
Lcy12g1412 Lcy-Chr12:31757001 Lcy8g0773 Lcy-Chr8:28362107 2.13E-18 wgd
Lcy6g1927 Lcy-Chr6:40315238 Lcy8g0773 Lcy-Chr8:28362107 1.97E-19 wgd
Lcy8g0773 Lcy-Chr8:28362107 Lcy9g0226 Lcy-Chr9:5644019 6.93E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20485 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0773 K09286 - csv:101209150 230.335