Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0777 ATGTGGGATCTCAATGATTCGCCCGATCATGGCGGAACTGATGAATTTGAGGGCCTTTCATCGATTGACGGCGATGAAGACAGAGCGAAATGGGTAGGATCCATTAATTCCAACTCGAGCTCTTCGGCGGTAGTTATGGAGGATGGATCCGACGCCGACGAGGCCAGCGCCGGCGAGGGCGAACCGCTAGTCCACCGGAAAAACTTCTCGGTAACGCACCCGCCGGCGACTCGTCAGTTCTTCCCCCTGGAGGATTCCGACGTGGGGGCTTCATCGGCCGCCGCCGGCGGTTCTACTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAGACGGAGCCTGTTGCCGCCGTTAGACCGGTGGCGGTTCTGCAGCCAATAAAGAAAAGCCGGCGAGGGCCGAGGTCCCGGAGTTCTCAATATCGCGGCGTCACGTTCTACCGGCGAACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGGTTTGATACTGCTCATTCAGCTGCGAGAGCCTATGACAGGGCGGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTACATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAAGCTCGAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAATTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGACAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGAATGAGCTTAGTACAACAGAATCATCATCAGGCAATGTCTTGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAACAAAACACCCTTTCATTTGGGAATCATTGCCCAAATGTCACCAATAAAATTGATTTGCAAACTAAGGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTAGAAGTTATAGGTTCCTTCAGACAGAGAAAATGCAGTTTCCTAGCGAACCGATCATTCGATCTCCACCCTCCATCGAAACAACAATAAATGGATGCTTGGAGAGACCTGTGGAACTGCAGAATCTTCACAATTACTCTCCACACATCAATCAATCAAACTCTCAAATTCAGTTGTTAAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAACTGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCCTAATTGGCTGCAGAAAAATAATGGATGCTTCTTGGAGAGACCCTCTTGA 1458 47.67 MWDLNDSPDHGGTDEFEGLSSIDGDEDRAKWVGSINSNSSSSAVVMEDGSDADEASAGEGEPLVHRKNFSVTHPPATRQFFPLEDSDVGASSAAAGGSTTFPRARWVGVKFCQTEPVAAVRPVAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGTEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELSTTESSSGNVLEQNLDLRLGNSSSKQNTLSFGNHCPNVTNKIDLQTKESNPQESNIFENDNGRSYRFLQTEKMQFPSEPIIRSPPSIETTINGCLERPVELQNLHNYSPHINQSNSQIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQFATAAASSGFPQLQISTSPNWLQKNNGCFLERPS 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28496511 28500310 + Maker00031181 Lcy8g0777 639669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0777 485 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677(InterPro)
Lcy8g0777 485 FunFam AP2-like ethylene-responsive transcription factor 141 200 - -
Lcy8g0777 485 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 SMART rav1_2 234 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 SMART rav1_2 142 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 CDD AP2 142 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 Pfam AP2 domain 233 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 Pfam AP2 domain 142 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 SUPERFAMILY DNA-binding domain 233 293 IPR016177 GO:0003677(InterPro)
Lcy8g0777 485 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 CDD AP2 233 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 FunFam AP2-like ethylene-responsive transcription factor 233 293 - -
Lcy8g0777 485 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 MobiDBLite consensus disorder prediction 1 59 - -
Lcy8g0777 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 347 - -
Lcy8g0777 485 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy8g0777 485 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1393 Lcy-Chr1:13480982 Lcy8g0777 Lcy-Chr8:28496511 4.79E-94 dispersed
Lcy5g0256 Lcy-Chr5:2409648 Lcy8g0777 Lcy-Chr8:28496511 5.52E-104 dispersed
Lcy8g0777 Lcy-Chr8:28496511 Lcy8g1865 Lcy-Chr8:44963989 2.76E-98 dispersed
Lcy1g0976 Lcy-Chr1:8598829 Lcy8g0777 Lcy-Chr8:28496511 4.65E-128 transposed
Lcy10g0392 Lcy-Chr10:8243982 Lcy8g0777 Lcy-Chr8:28496511 5.29E-41 wgd
Lcy12g1413 Lcy-Chr12:31767711 Lcy8g0777 Lcy-Chr8:28496511 6.95E-07 wgd
Lcy4g1350 Lcy-Chr4:32415061 Lcy8g0777 Lcy-Chr8:28496511 3.67E-42 wgd
Lcy6g1578 Lcy-Chr6:26854069 Lcy8g0777 Lcy-Chr8:28496511 3.08E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20486 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0777 K09284 - csv:101208665 770.385