Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g0789 | ATGGAAGCTAATATTGATGATCTTAAGCTACCTCTAAATCCCCGAGAGCACAATAATGAAGACAGAGTGTTAGAATTCATAGAAAGCGGAGGTTTCCCCGCCGACGAGTTTCCGGAACAAGGCATTGCAACATGTCGTCTAAGGATCAGAAGAATGGCCTGCCCAGCCAATGTCCACTCTCTTCAAAAAGCCCTAGCCATGGTCGACGGCATCAAACGAGCCCTCGTCGGTCTCGAGATCGAAGAAGCCAAAATCCTCTTCGATCCAAATTTGACCACTGAAGCCCTAATCCTCGCAGCAATCGACGATTCCGGCTTCGATGCCGAGCTCATCTCCGCCCCCAACAGACCCTACATTGTTCACATTAAACTCGATCGAGTTGCCTCCGCGGACATGCCCGCCATTAGATCCTCTCTCGAGCAAGCTTCTGGAGTCAACTCTGTTGAAATGGACGCGCTAGGGCGGATGGTTACCATCGGCTATGACCCCGATCGGACTGGTCCGAGGTCTCTCTTGCAGTGCCTCGAGAGCTACGGGGCAAGCTTGTATGTGCCTCCCAAGAGAAGAGATGTGGAGCAGCGTCAAGAGGCTTGTGCTTATAGGAACTTGTTCTTGCTGAGCTGCTTGTTTTCTGTTCCTGTCGTGGCTTTTGCAATGGTGCTTCCTATGCTTCCCCCTTATGGGGATTGGTTGAATTATAGGGTTTGCAATATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACACCAGTCCAGTTCCTAGCTGGCCAGAGATTTTATGTAGGATCATACCGTGCATTACAACAGAAATCTGCCAATATGGATGTTTTGGTTGCGGTAGGCACCAATGCAGCTTACTTTTACTCAGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAAAGGGAAAGATTTCTTTGAGACCAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTGGAGGTCATGGCCAAAGGGAAATCATCAGATGCTTTAGCAGAGCTGGCTCATCTTGCTCCTCATACAGCTTGTTTGATGACCTTCGATGATCATGGAAATTTGCTATCAGAGATGGAGATTGATACCCAGCTGATACAGAGGAATGATATAATTAAGATTGTTCCAGGGGCAAAAGTTCCTGTTGATGGGATTGTTATTAGTGGTGAAAGCAATGTGAATGAGAGTACAATTACCGGAGAAGCAAGATCCATTGAGAAAACACCCGGTGACAAGGTTATTGGGGGGACCGTCAATGAAAATGGATGCTTATTTGTTAAGACCACTCATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTCGTGGAATCAGCTCAGCTATCACGAGCACCAGCTCAAAAATTAGCAGATCAGATATCAAAGTTTTTTGTTCCTGTTGTTGTTGTAGCAGCATTTGTGACATGGCTTGGATGGTTAATCTGTGGAGAAGTTGGGCTATACCCTAAACATTGGATACCAAAAGGCATGGATGAGTTTGAACTTGCACTGCAGTTTAGCATTTCAGTGCTGGTGATCGCATGCCCATGTGCTCTTGGTTTAGCAACGCCAACTGCAATCATGGTTGCATCAGGGAAGGGTGCTTCTCTAGGTGTGCTCATTAAGGGAGCAAGTGCCCTTCAAAATGCATATAAGGTGAAAATGGTAGTTTTTGACAAGACTGGAACTCTAACAGTTGGCAGGCCAGAGGTAGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGTGATGTAGCAATAGCAATTGAGTCAAACAGTAAACACCCTTTAGCAAGATCTGTAGTGGAGCATGCAAAGAAAATGAGAAGGAAGTTTGGGGCTCGAACCGAATGTCGCAAACGCATCCAGAACTTTGAGGTCTTTCCAGGAGGAGGGGTTGGAGGAAGAATTGATAGAAAGCCAGTTTTAGTAGGGAACAGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTCGACCGGTATGTTATAGAAAATGAGAGGCTGGCTCAAACATGTGTCTTAGTGGCTATTAATGGCAGGGTAGCAGGAGGTTTTGGTGTTGTAGATGCGCCAAAGCCTGGGACGAAAGCTGTTATATCGTTTCTTCGCTCAATCGGCATCTCAAGCATAATGGTCACTGGCGATAACTGGGCCACAGCATTTGCCGTTGCAAGAGGAGTTGGGATTAATGAAGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATTAAATCCTTGAAGACAACAGGGAATATTGTAGCAATGGTGGGAGATGGAGTAAATGACTCACATGCCTTAGCTGCAGCTGATGTTGGCATTGCCATTGGTGCTGGAACAAATATTGCTATAGAAGCAGCTGATATAGTTCTCATGCGAAGCAATTTAGAAGATGTAGTCACAGCCATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATCTGGGCACTTGGCTATAATATCATCGGTATGCCTATTGCTGCCGGAATCCTATATCCCTTCACTGGAATCCGATTGCCGCCGTGGCTCGCTGGTGCCTGCATGGCTGCTTCCTCCCTTAGTGTCGTATGTTCTTCTCTCTTATTGAAATGTTATAGGAGACCTTTGAATTTTCAATCCACTTGA | 2676 | 45.25 | MEANIDDLKLPLNPREHNNEDRVLEFIESGGFPADEFPEQGIATCRLRIRRMACPANVHSLQKALAMVDGIKRALVGLEIEEAKILFDPNLTTEALILAAIDDSGFDAELISAPNRPYIVHIKLDRVASADMPAIRSSLEQASGVNSVEMDALGRMVTIGYDPDRTGPRSLLQCLESYGASLYVPPKRRDVEQRQEACAYRNLFLLSCLFSVPVVAFAMVLPMLPPYGDWLNYRVCNMLTVGMVLKWIFCTPVQFLAGQRFYVGSYRALQQKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFKGKDFFETSSMLISFILLGKYLEVMAKGKSSDALAELAHLAPHTACLMTFDDHGNLLSEMEIDTQLIQRNDIIKIVPGAKVPVDGIVISGESNVNESTITGEARSIEKTPGDKVIGGTVNENGCLFVKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADQISKFFVPVVVVAAFVTWLGWLICGEVGLYPKHWIPKGMDEFELALQFSISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKMVVFDKTGTLTVGRPEVVSVVLFSTFPMQELCDVAIAIESNSKHPLARSVVEHAKKMRRKFGARTECRKRIQNFEVFPGGGVGGRIDRKPVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCVLVAINGRVAGGFGVVDAPKPGTKAVISFLRSIGISSIMVTGDNWATAFAVARGVGINEVFAEMDPIGKANKIKSLKTTGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFTGIRLPPWLAGACMAASSLSVVCSSLLLKCYRRPLNFQST | 891 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28777764 | 28786438 | + | Maker00031126 | Lcy8g0789 | 639681 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g0789 | 891 | Gene3D | - | 331 | 453 | - | - | |
Lcy8g0789 | 891 | CDD | P-type_ATPase_Cu-like | 204 | 866 | - | - | |
Lcy8g0789 | 891 | SUPERFAMILY | HAD-like | 561 | 876 | IPR036412 | - | |
Lcy8g0789 | 891 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 565 | 571 | IPR018303 | - | |
Lcy8g0789 | 891 | SUPERFAMILY | HMA, heavy metal-associated domain | 39 | 115 | IPR036163 | GO:0046872(InterPro) | |
Lcy8g0789 | 891 | NCBIfam | heavy metal translocating P-type ATPase | 276 | 879 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
Lcy8g0789 | 891 | Gene3D | - | 43 | 113 | - | - | |
Lcy8g0789 | 891 | FunFam | Probable copper-transporting ATPase HMA5 | 695 | 827 | - | - | |
Lcy8g0789 | 891 | SFLD | p-type atpase | 545 | 822 | IPR044492 | - | |
Lcy8g0789 | 891 | Gene3D | - | 650 | 701 | IPR023299 | GO:0000166(InterPro) | |
Lcy8g0789 | 891 | Gene3D | - | 570 | 649 | IPR023299 | GO:0000166(InterPro) | |
Lcy8g0789 | 891 | PRINTS | Copper-transporting ATPase 1 signature | 204 | 225 | - | - | |
Lcy8g0789 | 891 | PRINTS | Copper-transporting ATPase 1 signature | 70 | 93 | - | - | |
Lcy8g0789 | 891 | PRINTS | Copper-transporting ATPase 1 signature | 44 | 69 | - | - | |
Lcy8g0789 | 891 | PRINTS | Copper-transporting ATPase 1 signature | 259 | 284 | - | - | |
Lcy8g0789 | 891 | PRINTS | Copper-transporting ATPase 1 signature | 239 | 259 | - | - | |
Lcy8g0789 | 891 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 311 | 557 | IPR023298 | - | |
Lcy8g0789 | 891 | SUPERFAMILY | HMA, heavy metal-associated domain | 133 | 184 | IPR036163 | GO:0046872(InterPro) | |
Lcy8g0789 | 891 | PRINTS | P-type cation-transporting ATPase superfamily signature | 717 | 727 | - | - | |
Lcy8g0789 | 891 | PRINTS | P-type cation-transporting ATPase superfamily signature | 399 | 413 | - | - | |
Lcy8g0789 | 891 | PRINTS | P-type cation-transporting ATPase superfamily signature | 563 | 577 | - | - | |
Lcy8g0789 | 891 | PRINTS | P-type cation-transporting ATPase superfamily signature | 695 | 706 | - | - | |
Lcy8g0789 | 891 | PRINTS | P-type cation-transporting ATPase superfamily signature | 770 | 789 | - | - | |
Lcy8g0789 | 891 | PRINTS | P-type cation-transporting ATPase superfamily signature | 793 | 805 | - | - | |
Lcy8g0789 | 891 | NCBIfam | HAD-IC family P-type ATPase | 678 | 847 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy8g0789 | 891 | NCBIfam | HAD-IC family P-type ATPase | 316 | 601 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy8g0789 | 891 | SFLD | C1.7: P-type atpase like | 545 | 822 | - | - | |
Lcy8g0789 | 891 | ProSiteProfiles | Heavy-metal-associated domain profile. | 43 | 109 | IPR006121 | GO:0046872(InterPro) | |
Lcy8g0789 | 891 | PANTHER | P-TYPE CATION-TRANSPORTING ATPASE | 18 | 887 | - | - | |
Lcy8g0789 | 891 | FunFam | Copper-transporting ATPase 1, putative | 331 | 453 | - | - | |
Lcy8g0789 | 891 | Pfam | haloacid dehalogenase-like hydrolase | 559 | 784 | - | - | |
Lcy8g0789 | 891 | SUPERFAMILY | Calcium ATPase, transduction domain A | 363 | 449 | IPR008250 | - | |
Lcy8g0789 | 891 | CDD | HMA | 47 | 109 | IPR006121 | GO:0046872(InterPro) | |
Lcy8g0789 | 891 | Gene3D | - | 530 | 826 | IPR023214 | - | |
Lcy8g0789 | 891 | Pfam | E1-E2 ATPase | 362 | 541 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1707 | Lcy-Chr1:17870056 | Lcy8g0789 | Lcy-Chr8:28777764 | 0.00E+00 | dispersed | |
Lcy8g0789 | Lcy-Chr8:28777764 | Lcy9g1938 | Lcy-Chr9:44387646 | 8.66E-66 | dispersed | |
Lcy8g0789 | Lcy-Chr8:28777764 | Lcy4g1622 | Lcy-Chr4:41100998 | 2.80E-76 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g0789 | K17686 | - | csv:101214276 | 1472.6 |