Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0789 ATGGAAGCTAATATTGATGATCTTAAGCTACCTCTAAATCCCCGAGAGCACAATAATGAAGACAGAGTGTTAGAATTCATAGAAAGCGGAGGTTTCCCCGCCGACGAGTTTCCGGAACAAGGCATTGCAACATGTCGTCTAAGGATCAGAAGAATGGCCTGCCCAGCCAATGTCCACTCTCTTCAAAAAGCCCTAGCCATGGTCGACGGCATCAAACGAGCCCTCGTCGGTCTCGAGATCGAAGAAGCCAAAATCCTCTTCGATCCAAATTTGACCACTGAAGCCCTAATCCTCGCAGCAATCGACGATTCCGGCTTCGATGCCGAGCTCATCTCCGCCCCCAACAGACCCTACATTGTTCACATTAAACTCGATCGAGTTGCCTCCGCGGACATGCCCGCCATTAGATCCTCTCTCGAGCAAGCTTCTGGAGTCAACTCTGTTGAAATGGACGCGCTAGGGCGGATGGTTACCATCGGCTATGACCCCGATCGGACTGGTCCGAGGTCTCTCTTGCAGTGCCTCGAGAGCTACGGGGCAAGCTTGTATGTGCCTCCCAAGAGAAGAGATGTGGAGCAGCGTCAAGAGGCTTGTGCTTATAGGAACTTGTTCTTGCTGAGCTGCTTGTTTTCTGTTCCTGTCGTGGCTTTTGCAATGGTGCTTCCTATGCTTCCCCCTTATGGGGATTGGTTGAATTATAGGGTTTGCAATATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACACCAGTCCAGTTCCTAGCTGGCCAGAGATTTTATGTAGGATCATACCGTGCATTACAACAGAAATCTGCCAATATGGATGTTTTGGTTGCGGTAGGCACCAATGCAGCTTACTTTTACTCAGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAAAGGGAAAGATTTCTTTGAGACCAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTGGAGGTCATGGCCAAAGGGAAATCATCAGATGCTTTAGCAGAGCTGGCTCATCTTGCTCCTCATACAGCTTGTTTGATGACCTTCGATGATCATGGAAATTTGCTATCAGAGATGGAGATTGATACCCAGCTGATACAGAGGAATGATATAATTAAGATTGTTCCAGGGGCAAAAGTTCCTGTTGATGGGATTGTTATTAGTGGTGAAAGCAATGTGAATGAGAGTACAATTACCGGAGAAGCAAGATCCATTGAGAAAACACCCGGTGACAAGGTTATTGGGGGGACCGTCAATGAAAATGGATGCTTATTTGTTAAGACCACTCATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTCGTGGAATCAGCTCAGCTATCACGAGCACCAGCTCAAAAATTAGCAGATCAGATATCAAAGTTTTTTGTTCCTGTTGTTGTTGTAGCAGCATTTGTGACATGGCTTGGATGGTTAATCTGTGGAGAAGTTGGGCTATACCCTAAACATTGGATACCAAAAGGCATGGATGAGTTTGAACTTGCACTGCAGTTTAGCATTTCAGTGCTGGTGATCGCATGCCCATGTGCTCTTGGTTTAGCAACGCCAACTGCAATCATGGTTGCATCAGGGAAGGGTGCTTCTCTAGGTGTGCTCATTAAGGGAGCAAGTGCCCTTCAAAATGCATATAAGGTGAAAATGGTAGTTTTTGACAAGACTGGAACTCTAACAGTTGGCAGGCCAGAGGTAGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGTGATGTAGCAATAGCAATTGAGTCAAACAGTAAACACCCTTTAGCAAGATCTGTAGTGGAGCATGCAAAGAAAATGAGAAGGAAGTTTGGGGCTCGAACCGAATGTCGCAAACGCATCCAGAACTTTGAGGTCTTTCCAGGAGGAGGGGTTGGAGGAAGAATTGATAGAAAGCCAGTTTTAGTAGGGAACAGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTCGACCGGTATGTTATAGAAAATGAGAGGCTGGCTCAAACATGTGTCTTAGTGGCTATTAATGGCAGGGTAGCAGGAGGTTTTGGTGTTGTAGATGCGCCAAAGCCTGGGACGAAAGCTGTTATATCGTTTCTTCGCTCAATCGGCATCTCAAGCATAATGGTCACTGGCGATAACTGGGCCACAGCATTTGCCGTTGCAAGAGGAGTTGGGATTAATGAAGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATTAAATCCTTGAAGACAACAGGGAATATTGTAGCAATGGTGGGAGATGGAGTAAATGACTCACATGCCTTAGCTGCAGCTGATGTTGGCATTGCCATTGGTGCTGGAACAAATATTGCTATAGAAGCAGCTGATATAGTTCTCATGCGAAGCAATTTAGAAGATGTAGTCACAGCCATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATCTGGGCACTTGGCTATAATATCATCGGTATGCCTATTGCTGCCGGAATCCTATATCCCTTCACTGGAATCCGATTGCCGCCGTGGCTCGCTGGTGCCTGCATGGCTGCTTCCTCCCTTAGTGTCGTATGTTCTTCTCTCTTATTGAAATGTTATAGGAGACCTTTGAATTTTCAATCCACTTGA 2676 45.25 MEANIDDLKLPLNPREHNNEDRVLEFIESGGFPADEFPEQGIATCRLRIRRMACPANVHSLQKALAMVDGIKRALVGLEIEEAKILFDPNLTTEALILAAIDDSGFDAELISAPNRPYIVHIKLDRVASADMPAIRSSLEQASGVNSVEMDALGRMVTIGYDPDRTGPRSLLQCLESYGASLYVPPKRRDVEQRQEACAYRNLFLLSCLFSVPVVAFAMVLPMLPPYGDWLNYRVCNMLTVGMVLKWIFCTPVQFLAGQRFYVGSYRALQQKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFKGKDFFETSSMLISFILLGKYLEVMAKGKSSDALAELAHLAPHTACLMTFDDHGNLLSEMEIDTQLIQRNDIIKIVPGAKVPVDGIVISGESNVNESTITGEARSIEKTPGDKVIGGTVNENGCLFVKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADQISKFFVPVVVVAAFVTWLGWLICGEVGLYPKHWIPKGMDEFELALQFSISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKMVVFDKTGTLTVGRPEVVSVVLFSTFPMQELCDVAIAIESNSKHPLARSVVEHAKKMRRKFGARTECRKRIQNFEVFPGGGVGGRIDRKPVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCVLVAINGRVAGGFGVVDAPKPGTKAVISFLRSIGISSIMVTGDNWATAFAVARGVGINEVFAEMDPIGKANKIKSLKTTGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFTGIRLPPWLAGACMAASSLSVVCSSLLLKCYRRPLNFQST 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28777764 28786438 + Maker00031126 Lcy8g0789 639681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0789 891 Gene3D - 331 453 - -
Lcy8g0789 891 CDD P-type_ATPase_Cu-like 204 866 - -
Lcy8g0789 891 SUPERFAMILY HAD-like 561 876 IPR036412 -
Lcy8g0789 891 ProSitePatterns E1-E2 ATPases phosphorylation site. 565 571 IPR018303 -
Lcy8g0789 891 SUPERFAMILY HMA, heavy metal-associated domain 39 115 IPR036163 GO:0046872(InterPro)
Lcy8g0789 891 NCBIfam heavy metal translocating P-type ATPase 276 879 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Lcy8g0789 891 Gene3D - 43 113 - -
Lcy8g0789 891 FunFam Probable copper-transporting ATPase HMA5 695 827 - -
Lcy8g0789 891 SFLD p-type atpase 545 822 IPR044492 -
Lcy8g0789 891 Gene3D - 650 701 IPR023299 GO:0000166(InterPro)
Lcy8g0789 891 Gene3D - 570 649 IPR023299 GO:0000166(InterPro)
Lcy8g0789 891 PRINTS Copper-transporting ATPase 1 signature 204 225 - -
Lcy8g0789 891 PRINTS Copper-transporting ATPase 1 signature 70 93 - -
Lcy8g0789 891 PRINTS Copper-transporting ATPase 1 signature 44 69 - -
Lcy8g0789 891 PRINTS Copper-transporting ATPase 1 signature 259 284 - -
Lcy8g0789 891 PRINTS Copper-transporting ATPase 1 signature 239 259 - -
Lcy8g0789 891 SUPERFAMILY Calcium ATPase, transmembrane domain M 311 557 IPR023298 -
Lcy8g0789 891 SUPERFAMILY HMA, heavy metal-associated domain 133 184 IPR036163 GO:0046872(InterPro)
Lcy8g0789 891 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Lcy8g0789 891 PRINTS P-type cation-transporting ATPase superfamily signature 399 413 - -
Lcy8g0789 891 PRINTS P-type cation-transporting ATPase superfamily signature 563 577 - -
Lcy8g0789 891 PRINTS P-type cation-transporting ATPase superfamily signature 695 706 - -
Lcy8g0789 891 PRINTS P-type cation-transporting ATPase superfamily signature 770 789 - -
Lcy8g0789 891 PRINTS P-type cation-transporting ATPase superfamily signature 793 805 - -
Lcy8g0789 891 NCBIfam HAD-IC family P-type ATPase 678 847 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy8g0789 891 NCBIfam HAD-IC family P-type ATPase 316 601 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy8g0789 891 SFLD C1.7: P-type atpase like 545 822 - -
Lcy8g0789 891 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872(InterPro)
Lcy8g0789 891 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 18 887 - -
Lcy8g0789 891 FunFam Copper-transporting ATPase 1, putative 331 453 - -
Lcy8g0789 891 Pfam haloacid dehalogenase-like hydrolase 559 784 - -
Lcy8g0789 891 SUPERFAMILY Calcium ATPase, transduction domain A 363 449 IPR008250 -
Lcy8g0789 891 CDD HMA 47 109 IPR006121 GO:0046872(InterPro)
Lcy8g0789 891 Gene3D - 530 826 IPR023214 -
Lcy8g0789 891 Pfam E1-E2 ATPase 362 541 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1707 Lcy-Chr1:17870056 Lcy8g0789 Lcy-Chr8:28777764 0.00E+00 dispersed
Lcy8g0789 Lcy-Chr8:28777764 Lcy9g1938 Lcy-Chr9:44387646 8.66E-66 dispersed
Lcy8g0789 Lcy-Chr8:28777764 Lcy4g1622 Lcy-Chr4:41100998 2.80E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0789 K17686 - csv:101214276 1472.6