Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0814 ATGGCATCCAAGAAGGTCTCAACCAATGTGGGGGGGGACTCAACATCGACGGGCAAAGAGGCGGAGACTATTATCGTCCTCTCACCACAAGAAACGACTGCACGCTTGCTGTCAGTCGAAGATGATGTGCGTGAGATTAGAAAAATCCTAGAGATGATGTGTGAAAAAATGGGCTGCAAGATTGGACAGGAAGTTACTGAATCTCAAGAACACATGAACATGGAGAAAAGGCCGCAAGAATTTCAGAAGGAAGGTGCAATGGGGGTATCATTACTTAAAGTGCTTCTTAGACATATTTCATCATTTCTTCAACTTTCATCGACTGACTACATAAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTCAATCTATTGAGGCCAATACTGGATGCAGTTGTTGATTTAGATATAGCTTCCGATGAAGAGCTTACTAAGGCATTTGAAGAACTTGATCATTCAGTGGATGAACTAAGGGTGCTCTTTGAAAACTGGCAACCCTTGTCGAGTAAAGTATACTTTGTGCTGCAAAGTGAAGCATTGATAACAAAGATTGGGAAATCTAGCCTGGATATATTCCAACTTCTTCAGTCTTCTAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAAGAAGAAATATCTTCTGTTATTAAAGATGCCATAAGGGATCAAGTAGAGGGTATTGCACCTAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTGAGCTTGAGATCAAATCAGGAGATTTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCGGAGGACATTGATCAAATGGTTGCTCTTGTAACCCGTATGCATGAACGACTTATTATGATAAAGCAATCCCAAAGTTCTAGCCCTGTATCAATACCTGCTGATTTCTGCTGTCCACTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGGATTTTTATAAAAAATTGGATTGATTTGGGGCTCAATGTTTGCCCAAAGACTAGACAGACATTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAATTGTCTGATCCCTCAAGGTCAGTGAACTTAAACAAGCTTTCGCCCCTTCTTGTTGGGAGCTTTGAGTCTGATACCCATCGAGAACCCCTTTTTCCTCATTCTCCTGGCTACCAACCGATTTCCCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTCGGTGGAACTCATCGAGATGGAAATTCTTCTTTGCTCTCCCATTCTTTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAAGAGGGATTGATGTTAGTAGATTATTGCTTACAAGTTCGGAAGATCGAATGACCAAATTGGAAGAAAATGGTTGTGAATTGGTTGCTAAACCATCTATGTCACCTTCTAGAACTAATGTTCCAAATACCAGTGAGGATGAACCGTCACATAGTCATAATAGGACGGCCTCCACCTCTAGTGCAGTCTCAAATGCTAATCTCTCTCGAGGAACTTCAGGGGAAGCCAATGAAGCTTCACAGTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCAACTTCCAACCACAGAGAACCAGAGCTTCCAGCCAGACTAGCTGACTCCAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCACTAGAATAATTACATCATCTGCTAATGAGACAAGGCCAGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTTGAGGAATTGAAGAGCAGTTCACTCGAAACTTTAAGAGGTGCTACGGCTGAATTGCGGCTACTGGCCAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCCATTGAATATTTGGTTGATTTGCTCCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTGAACTTATCTATCAATGACAATAACAAAAATGCCATTGCCCAGGCAAATGCAATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAGGCAAAGGAGAATTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTGTTGGGTAATGGAACTCCAAGGGGAAAGAAAGATGCAGCCACAGCTTTGTTTAATCTGTCAATATTCCATGAGAACAAGGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCTGAGGGTAGGTCTGCAATTGGTCAGGAAGGTGGAATTCCTGTTCTGGTCGAGGTTGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCTGCAGCATTGTTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGCATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAGAAGGCCCAAGCACTTCTTAGCCATTTCAGAAGCCAGAGACATGGCAATTCGGGAAGAGGGTAA 2772 43.72 MASKKVSTNVGGDSTSTGKEAETIIVLSPQETTARLLSVEDDVREIRKILEMMCEKMGCKIGQEVTESQEHMNMEKRPQEFQKEGAMGVSLLKVLLRHISSFLQLSSTDYINLQPTLKYYHKIEGVFNLLRPILDAVVDLDIASDEELTKAFEELDHSVDELRVLFENWQPLSSKVYFVLQSEALITKIGKSSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKHIGKEEISSVIKDAIRDQVEGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMVALVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERIFIKNWIDLGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRSVNLNKLSPLLVGSFESDTHREPLFPHSPGYQPISPQSTRSAGSGKNLNSLGGTHRDGNSSLLSHSFSEDSLSNDAGDERGIDVSRLLLTSSEDRMTKLEENGCELVAKPSMSPSRTNVPNTSEDEPSHSHNRTASTSSAVSNANLSRGTSGEANEASQLSTNLTGYGSDAAGESKSEPLAAATSTSNHREPELPARLADSRSRGNTMWLRPSERFATRIITSSANETRPDLSAIEAQVQKVVEELKSSSLETLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKNAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29516659 29527885 + Maker00031137 Lcy8g0814 639706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0814 923 MobiDBLite consensus disorder prediction 432 472 - -
Lcy8g0814 923 FunFam RING-type E3 ubiquitin transferase 623 918 - -
Lcy8g0814 923 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 396 IPR013083 -
Lcy8g0814 923 MobiDBLite consensus disorder prediction 533 571 - -
Lcy8g0814 923 CDD RING-Ubox_PUB 323 375 IPR045210 -
Lcy8g0814 923 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 680 722 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 803 844 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 PANTHER U BOX DOMAIN-CONTAINING 115 916 - -
Lcy8g0814 923 SUPERFAMILY RING/U-box 311 398 - -
Lcy8g0814 923 SMART Ubox_2 325 388 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy8g0814 923 MobiDBLite consensus disorder prediction 512 526 - -
Lcy8g0814 923 Pfam Armadillo/beta-catenin-like repeat 710 749 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 Pfam Armadillo/beta-catenin-like repeat 753 790 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 Pfam Armadillo/beta-catenin-like repeat 671 708 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 Coils Coil 265 295 - -
Lcy8g0814 923 SUPERFAMILY ARM repeat 639 912 IPR016024 -
Lcy8g0814 923 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 762 804 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 MobiDBLite consensus disorder prediction 503 607 - -
Lcy8g0814 923 SMART arm_5 669 709 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 SMART arm_5 751 791 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 SMART arm_5 710 750 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 SMART arm_5 832 872 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 SMART arm_5 792 831 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 SMART arm_5 874 914 IPR000225 GO:0005515(InterPro)
Lcy8g0814 923 Pfam U-box domain 322 392 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy8g0814 923 MobiDBLite consensus disorder prediction 423 479 - -
Lcy8g0814 923 ProSiteProfiles U-box domain profile. 321 395 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy8g0814 923 FunFam RING-type E3 ubiquitin transferase 321 396 - -
Lcy8g0814 923 Gene3D - 618 919 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0943 Lcy-Chr1:8243448 Lcy8g0814 Lcy-Chr8:29516659 3.08E-27 dispersed
Lcy1g0945 Lcy-Chr1:8250592 Lcy8g0814 Lcy-Chr8:29516659 9.54E-42 dispersed
Lcy8g0814 Lcy-Chr8:29516659 Lcy4g0322 Lcy-Chr4:4049594 2.26E-32 dispersed
Lcy3g1517 Lcy-Chr3:42051520 Lcy8g0814 Lcy-Chr8:29516659 1.71E-71 transposed
Lcy11g0518 Lcy-Chr11:12097104 Lcy8g0814 Lcy-Chr8:29516659 3.87E-13 wgd
Lcy13g1093 Lcy-Chr13:24647722 Lcy8g0814 Lcy-Chr8:29516659 2.30E-29 wgd
Lcy2g1340 Lcy-Chr2:15075013 Lcy8g0814 Lcy-Chr8:29516659 2.96E-10 wgd
Lcy2g2421 Lcy-Chr2:51000751 Lcy8g0814 Lcy-Chr8:29516659 5.16E-09 wgd
Lcy3g0444 Lcy-Chr3:15338776 Lcy8g0814 Lcy-Chr8:29516659 1.01E-37 wgd
Lcy4g1315 Lcy-Chr4:30688999 Lcy8g0814 Lcy-Chr8:29516659 6.74E-32 wgd
Lcy5g0878 Lcy-Chr5:14435801 Lcy8g0814 Lcy-Chr8:29516659 5.07E-10 wgd
Lcy5g0890 Lcy-Chr5:14990716 Lcy8g0814 Lcy-Chr8:29516659 6.18E-13 wgd
Lcy5g1212 Lcy-Chr5:27792961 Lcy8g0814 Lcy-Chr8:29516659 1.37E-14 wgd
Lcy6g1737 Lcy-Chr6:34209209 Lcy8g0814 Lcy-Chr8:29516659 1.88E-17 wgd
Lcy8g0477 Lcy-Chr8:15563748 Lcy8g0814 Lcy-Chr8:29516659 3.25E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0814 - - - 0.0