Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g0834 | ATGGCGGACGAGCAGCCCTCAGCCGCTAATCGCCGGAGGAGCCGAGGATCTGAGGCAGCCGCCCGCCTTCAGGCTCTAGAACGTCTCAAAGCCATCCGCAGCGGCGGCCGTCGATCGGAATCCGGTGCTTTCCAAGTTAAGTTGGAGAACCCTATCTACGATACCATTCCCGAGGACGAGTACGATGCTCTCGTTGCGAAGCGTCGTGAAGAAGCCCGAGGGTTTATTGTTGACGACGACGGTCTTGGATATGGAGACGAAGGGGAAGAAGAGGATTGGTCTAAAGCTGGGGTTTGTACCTCCGATGAGTCTGACGGTGAGCTTGAGAAACCTAAGAAGAGGAAAGCAGAGAAGAAAGAAGCGCAACCCAAGAAGCCCTCTTCTTCTTCCCTATCGGCCGCCGCGGCGATGATGGGAAAACAAAAGCTTTCTTCGATGTTCACTTCATCGATCTTCAGGAAAACGGGTAGAGACGACAAGGCTAAAGGGTTGGCCTGCGACAGTATTGTCGATGATGTGATTGCCGAATTTGCGCCGGATGAAACTGATAGAGAGCGGCGTAGAAAGGGGCAAATTGGAGCTATACCGGTTTCGAGGACTTTTGCGCCAGTTCCTGCTGTGAAGTGCGAGGGATTAACTGCCCAGAGTCTTACTTTGACTGGTGGATCTGAATCGATCAAGGATACTGAAAATGGGAACTCTGGAATGACCAGGGTTATTACGAGCAGCGATTTGGAGCCTGTGCGAAATGGTGTAGAGGTCCAGGGAAATGGTGAGACTAAGGAATTTGATGAAAAGGAGGGTTTCAATTCTCAAATCAATCTGGATCCGACCGTTCAATCACATAATTCTTCGATCAAGGAAGATGTACATGAAGATAATAGGCCAATTATGATTGAAACAAAGGCAGAACTGTTAGTAAAGAAGGAGCCGGCTTGCACTTTGAATGCTAAGATTAGCGATGAAAAAGACCCAGCTTTGAGTGCTACTGCAGGATGGCAAGCAGTGAGGAGTGAAGGGAGTGGAAATGTTGATTCTGCTGCAGAAATTTCAGAAAAATCCGATTTTGATATTGACGCTGACGGCTCTCTGCCTTTCTATATAGTTGATGCGCACGAGGAGCTCTTTGGTGCAATTATGGGCACTGTATATCTGTTTGGCAAGGTCAAAGCTGGAGATACGTACCACAGTTGTTGTGTGGTGGTGAAAAACATGCAAAGATGCATATATGCTATTCCAAGTGCCTCTTTTCTTCATTCGGATGAGATGATGAAGCTTCAGAATGATGCTGAACAGTCTCGGCTTTCTCCTACAGATCTGCGTGCCAAGTTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATAGCTAAACAGTTGCTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTTCAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAATTACGTGCTTAAGATTAATTACCCATTCAAGCACCCCCCGCTTCCTGCTGATCTAAAAGGAGATTCATTCTGTGCTCTCTTAGGAACACATCGCAGTGCTTTGGAGCTTCTTCTCATTAAAAGGAAAATAAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTTTCTTCCTGTCCTGGTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCTCCAAAAGATGTTAAGACTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTTCTATGATTGTCAGTGCAATAAACATAAAGACCATCATTAACGAAAAGCAGAATGTCAATGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCTATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCAAAGATAGAAATTTGAAGGCTGGATCAAATGTTTTAATCTGCGAGGGCAATGAAAGGGCCTTGTTGAATCGATTAATGATAGAGTTATTCAAATTGGATAGTGATGTGCTGGTTGGACACAATATCTCTGGGTTTGACCTTGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCACGTGGTCTAAAATAGGTCGCCTTAAACGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGAGCAAGTCCAGGAGTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACATACTTGTCTTCCCGTGACCTATTGAAAGAGATAAGTTATTCTTTGACAGAGCTAGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCACTCCACATGATATTCCAAGAATGTACCAAGCATCGGAGTCTCTCATGAACCTGGGAGCTTTAGCAGAAGACTTAATTGTGGAGGTAGGCCAGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGTCAGTTGACTAATATCAGTGGTAATCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTGCTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGATTTCATCTTATGTGAAAGAAAAGAAGATGGCTAAAAAGAGAATGAATCATAGTTCTGAGGAAAAAAATGTTGATGAATTTGATTTAGATGATGCAAATGTAGAAGCTCCCAATCCTGAAAGTGGAAAAGGCAAGAAGGGGTCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATATATTGCTCCTGGACTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGACCTCCAGATGGTGTTGTTCCTCGTCTGCCATCTAGTAAAGTCACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCATCTGGTCTCAAGCTCCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGCCTAGGGTTTTCTAATTCGAGGTTTTATGCAAAACCACTGGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTGCAGAATAATCTGAACCTAGAGGTAATTTATGGTGATACTGATTCAATAATGATTCATAGTGGACTGGATGATATTAGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTCAACAAAAAGTACAAGTGTTTAGAAATTGATCTTGATGGTTTGTATAAGAGAATGTTGCTTCTGAAGAAAAAGAAATACGCAGCTGTAAAATTGCAGTTCAAGGATGGAACGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATACTGTCTGGAGGGTCATGTGAGGATGTCATTGAATCAATACATGACTCTCTTCTGAAGATACAAGAGGATATGAGGAAAGGACAAGTTGCACTTGAGAAATATATCATCACGAAGACCTTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACACGTTCAAGTTGCACAAAGGTTAAAACAAATGGGCTATTCAACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAGCAGGGATCTACTTCTGGTGGTTCTACAGGCATTGCTCAGCGGGCTAGACATCCTGATGAATTAAAAAAAGAAGATGGAAAATGGATGATTGACATCGATTACTACCTGTCACAGCAGATTCACCCTGTGGTTTCTCGTCTATGTGCCTCAATTCAGGGCACTAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCGAAGTTTCAAAACAAATCAAGTGAAGTTTACCGAAGTGATGTCTCCTCTTCCCTCTTGTGTTCCGTAAATGATGAGGAAAGGTATCAGGGCTGTATACCACTGACATTAACTTGCCCCAGCTGCTCTGGTACTTTTGAGTGTCCTGCTATCTTCAATTCTATATACAAATCTACACATGGAACGCAAGAAAGGCCAGTTGATGAGCCTACAAGCAAATTTTGGAATAATTTGCATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGTAAAAAGGCAAGCAGAGAGGTTCATTTCAATGTATTATAATGGCTTACTGATGTGTGAGGATGAAACCTGCAAACATGCCACACGTGCTGTCAGTCTTCGACTTAAGGGCAACTCTGAGAAAGGAACCATCTGCCCAAACTATCCTAACTGCAACGGGCGTCTAATAAGAAAGTACACGGAAGCGGATCTGTACAAGCAGCTTGCGTATTTTAGTTACATTTTGGATACCGTACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACTTTAGAGAAAGAAATGGCAAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGCATTCGAGAACGCAGTGCATATGGTTGGTTGCAGTTGCAGGATTTTGTAGTTACAGTTTGA | 4683 | 43.41 | MADEQPSAANRRRSRGSEAAARLQALERLKAIRSGGRRSESGAFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCTSDESDGELEKPKKRKAEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTGRDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGQIGAIPVSRTFAPVPAVKCEGLTAQSLTLTGGSESIKDTENGNSGMTRVITSSDLEPVRNGVEVQGNGETKEFDEKEGFNSQINLDPTVQSHNSSIKEDVHEDNRPIMIETKAELLVKKEPACTLNAKISDEKDPALSATAGWQAVRSEGSGNVDSAAEISEKSDFDIDADGSLPFYIVDAHEELFGAIMGTVYLFGKVKAGDTYHSCCVVVKNMQRCIYAIPSASFLHSDEMMKLQNDAEQSRLSPTDLRAKLQEVTAGLKNEIAKQLLDLNVSTFSMTPVQRKYAFERQDIPAGENYVLKINYPFKHPPLPADLKGDSFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPGSQRVSWCKFEVIVDSPKDVKTSTSSSKTLEIPSMIVSAINIKTIINEKQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESKDRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSTWSKIGRLKRSVMPKLGKGGSIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHDIPRMYQASESLMNLGALAEDLIVEVGQIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKISSYVKEKKMAKKRMNHSSEEKNVDEFDLDDANVEAPNPESGKGKKGSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERPPDGVVPRLPSSKVTGVLPELLKNLVQRRRMVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDISKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVIESIHDSLLKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSTGIAQRARHPDELKKEDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSSEVYRSDVSSSLLCSVNDEERYQGCIPLTLTCPSCSGTFECPAIFNSIYKSTHGTQERPVDEPTSKFWNNLHCPKCPDEANAGRMTPGMIANQVKRQAERFISMYYNGLLMCEDETCKHATRAVSLRLKGNSEKGTICPNYPNCNGRLIRKYTEADLYKQLAYFSYILDTVRCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSIRERSAYGWLQLQDFVVTV | 1560 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 30183034 | 30200429 | - | Maker00031209 | Lcy8g0834 | 639726 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g0834 | 1560 | Gene3D | - | 366 | 565 | - | - | |
Lcy8g0834 | 1560 | Gene3D | - | 579 | 908 | IPR036397 | GO:0003676(InterPro) | |
Lcy8g0834 | 1560 | Gene3D | DNA Polymerase alpha, zinc finger | 1351 | 1545 | IPR038256 | - | |
Lcy8g0834 | 1560 | FunFam | DNA polymerase | 1351 | 1546 | - | - | |
Lcy8g0834 | 1560 | Pfam | DNA polymerase family B, exonuclease domain | 519 | 773 | IPR006133 | - | |
Lcy8g0834 | 1560 | Pfam | DNA polymerase family B | 852 | 1313 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
Lcy8g0834 | 1560 | Gene3D | Helix hairpin bin | 995 | 1038 | - | - | |
Lcy8g0834 | 1560 | PRINTS | DNA-directed DNA-polymerase family B signature | 1078 | 1086 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Lcy8g0834 | 1560 | PRINTS | DNA-directed DNA-polymerase family B signature | 949 | 962 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Lcy8g0834 | 1560 | PRINTS | DNA-directed DNA-polymerase family B signature | 1025 | 1037 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Lcy8g0834 | 1560 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lcy8g0834 | 1560 | CDD | DNA_polB_alpha_exo | 579 | 843 | - | - | |
Lcy8g0834 | 1560 | Gene3D | Palm domain of DNA polymerase | 919 | 1142 | IPR023211 | - | |
Lcy8g0834 | 1560 | FunFam | DNA polymerase | 1156 | 1342 | - | - | |
Lcy8g0834 | 1560 | SUPERFAMILY | Ribonuclease H-like | 361 | 880 | IPR012337 | - | |
Lcy8g0834 | 1560 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
Lcy8g0834 | 1560 | MobiDBLite | consensus disorder prediction | 894 | 932 | - | - | |
Lcy8g0834 | 1560 | NCBIfam | DNA polymerase (pol2) | 51 | 1310 | - | - | |
Lcy8g0834 | 1560 | MobiDBLite | consensus disorder prediction | 88 | 124 | - | - | |
Lcy8g0834 | 1560 | FunFam | DNA polymerase | 406 | 532 | - | - | |
Lcy8g0834 | 1560 | SUPERFAMILY | DNA/RNA polymerases | 876 | 1328 | IPR043502 | - | |
Lcy8g0834 | 1560 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 14 | 1558 | - | GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER) | |
Lcy8g0834 | 1560 | FunFam | DNA polymerase | 990 | 1039 | - | - | |
Lcy8g0834 | 1560 | FunFam | DNA polymerase | 579 | 906 | - | - | |
Lcy8g0834 | 1560 | Gene3D | - | 406 | 532 | - | - | |
Lcy8g0834 | 1560 | Pfam | DNA Polymerase alpha zinc finger | 1352 | 1556 | IPR015088 | GO:0003887(InterPro)|GO:0006260(InterPro) | |
Lcy8g0834 | 1560 | CDD | POLBc_alpha | 925 | 1328 | IPR045846 | GO:0003887(InterPro)|GO:1902975(InterPro) | |
Lcy8g0834 | 1560 | SMART | polmehr3 | 579 | 1092 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Lcy8g0834 | 1560 | Coils | Coil | 1106 | 1126 | - | - | |
Lcy8g0834 | 1560 | MobiDBLite | consensus disorder prediction | 76 | 136 | - | - | |
Lcy8g0834 | 1560 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Lcy8g0834 | 1560 | Gene3D | - | 1156 | 1341 | IPR042087 | - | |
Lcy8g0834 | 1560 | ProSitePatterns | DNA polymerase family B signature. | 1080 | 1088 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g1846 | Lcy-Chr4:44518036 | Lcy8g0834 | Lcy-Chr8:30183034 | 2.39E-25 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g0834 | K02320 | - | csv:101211201 | 2655.94 |