Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0834 ATGGCGGACGAGCAGCCCTCAGCCGCTAATCGCCGGAGGAGCCGAGGATCTGAGGCAGCCGCCCGCCTTCAGGCTCTAGAACGTCTCAAAGCCATCCGCAGCGGCGGCCGTCGATCGGAATCCGGTGCTTTCCAAGTTAAGTTGGAGAACCCTATCTACGATACCATTCCCGAGGACGAGTACGATGCTCTCGTTGCGAAGCGTCGTGAAGAAGCCCGAGGGTTTATTGTTGACGACGACGGTCTTGGATATGGAGACGAAGGGGAAGAAGAGGATTGGTCTAAAGCTGGGGTTTGTACCTCCGATGAGTCTGACGGTGAGCTTGAGAAACCTAAGAAGAGGAAAGCAGAGAAGAAAGAAGCGCAACCCAAGAAGCCCTCTTCTTCTTCCCTATCGGCCGCCGCGGCGATGATGGGAAAACAAAAGCTTTCTTCGATGTTCACTTCATCGATCTTCAGGAAAACGGGTAGAGACGACAAGGCTAAAGGGTTGGCCTGCGACAGTATTGTCGATGATGTGATTGCCGAATTTGCGCCGGATGAAACTGATAGAGAGCGGCGTAGAAAGGGGCAAATTGGAGCTATACCGGTTTCGAGGACTTTTGCGCCAGTTCCTGCTGTGAAGTGCGAGGGATTAACTGCCCAGAGTCTTACTTTGACTGGTGGATCTGAATCGATCAAGGATACTGAAAATGGGAACTCTGGAATGACCAGGGTTATTACGAGCAGCGATTTGGAGCCTGTGCGAAATGGTGTAGAGGTCCAGGGAAATGGTGAGACTAAGGAATTTGATGAAAAGGAGGGTTTCAATTCTCAAATCAATCTGGATCCGACCGTTCAATCACATAATTCTTCGATCAAGGAAGATGTACATGAAGATAATAGGCCAATTATGATTGAAACAAAGGCAGAACTGTTAGTAAAGAAGGAGCCGGCTTGCACTTTGAATGCTAAGATTAGCGATGAAAAAGACCCAGCTTTGAGTGCTACTGCAGGATGGCAAGCAGTGAGGAGTGAAGGGAGTGGAAATGTTGATTCTGCTGCAGAAATTTCAGAAAAATCCGATTTTGATATTGACGCTGACGGCTCTCTGCCTTTCTATATAGTTGATGCGCACGAGGAGCTCTTTGGTGCAATTATGGGCACTGTATATCTGTTTGGCAAGGTCAAAGCTGGAGATACGTACCACAGTTGTTGTGTGGTGGTGAAAAACATGCAAAGATGCATATATGCTATTCCAAGTGCCTCTTTTCTTCATTCGGATGAGATGATGAAGCTTCAGAATGATGCTGAACAGTCTCGGCTTTCTCCTACAGATCTGCGTGCCAAGTTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATAGCTAAACAGTTGCTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTTCAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAATTACGTGCTTAAGATTAATTACCCATTCAAGCACCCCCCGCTTCCTGCTGATCTAAAAGGAGATTCATTCTGTGCTCTCTTAGGAACACATCGCAGTGCTTTGGAGCTTCTTCTCATTAAAAGGAAAATAAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTTTCTTCCTGTCCTGGTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCTCCAAAAGATGTTAAGACTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTTCTATGATTGTCAGTGCAATAAACATAAAGACCATCATTAACGAAAAGCAGAATGTCAATGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCTATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCAAAGATAGAAATTTGAAGGCTGGATCAAATGTTTTAATCTGCGAGGGCAATGAAAGGGCCTTGTTGAATCGATTAATGATAGAGTTATTCAAATTGGATAGTGATGTGCTGGTTGGACACAATATCTCTGGGTTTGACCTTGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCACGTGGTCTAAAATAGGTCGCCTTAAACGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGAGCAAGTCCAGGAGTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACATACTTGTCTTCCCGTGACCTATTGAAAGAGATAAGTTATTCTTTGACAGAGCTAGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCACTCCACATGATATTCCAAGAATGTACCAAGCATCGGAGTCTCTCATGAACCTGGGAGCTTTAGCAGAAGACTTAATTGTGGAGGTAGGCCAGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGTCAGTTGACTAATATCAGTGGTAATCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTGCTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGATTTCATCTTATGTGAAAGAAAAGAAGATGGCTAAAAAGAGAATGAATCATAGTTCTGAGGAAAAAAATGTTGATGAATTTGATTTAGATGATGCAAATGTAGAAGCTCCCAATCCTGAAAGTGGAAAAGGCAAGAAGGGGTCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATATATTGCTCCTGGACTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGACCTCCAGATGGTGTTGTTCCTCGTCTGCCATCTAGTAAAGTCACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCATCTGGTCTCAAGCTCCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGCCTAGGGTTTTCTAATTCGAGGTTTTATGCAAAACCACTGGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTGCAGAATAATCTGAACCTAGAGGTAATTTATGGTGATACTGATTCAATAATGATTCATAGTGGACTGGATGATATTAGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTCAACAAAAAGTACAAGTGTTTAGAAATTGATCTTGATGGTTTGTATAAGAGAATGTTGCTTCTGAAGAAAAAGAAATACGCAGCTGTAAAATTGCAGTTCAAGGATGGAACGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATACTGTCTGGAGGGTCATGTGAGGATGTCATTGAATCAATACATGACTCTCTTCTGAAGATACAAGAGGATATGAGGAAAGGACAAGTTGCACTTGAGAAATATATCATCACGAAGACCTTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACACGTTCAAGTTGCACAAAGGTTAAAACAAATGGGCTATTCAACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAGCAGGGATCTACTTCTGGTGGTTCTACAGGCATTGCTCAGCGGGCTAGACATCCTGATGAATTAAAAAAAGAAGATGGAAAATGGATGATTGACATCGATTACTACCTGTCACAGCAGATTCACCCTGTGGTTTCTCGTCTATGTGCCTCAATTCAGGGCACTAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCGAAGTTTCAAAACAAATCAAGTGAAGTTTACCGAAGTGATGTCTCCTCTTCCCTCTTGTGTTCCGTAAATGATGAGGAAAGGTATCAGGGCTGTATACCACTGACATTAACTTGCCCCAGCTGCTCTGGTACTTTTGAGTGTCCTGCTATCTTCAATTCTATATACAAATCTACACATGGAACGCAAGAAAGGCCAGTTGATGAGCCTACAAGCAAATTTTGGAATAATTTGCATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGTAAAAAGGCAAGCAGAGAGGTTCATTTCAATGTATTATAATGGCTTACTGATGTGTGAGGATGAAACCTGCAAACATGCCACACGTGCTGTCAGTCTTCGACTTAAGGGCAACTCTGAGAAAGGAACCATCTGCCCAAACTATCCTAACTGCAACGGGCGTCTAATAAGAAAGTACACGGAAGCGGATCTGTACAAGCAGCTTGCGTATTTTAGTTACATTTTGGATACCGTACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACTTTAGAGAAAGAAATGGCAAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGCATTCGAGAACGCAGTGCATATGGTTGGTTGCAGTTGCAGGATTTTGTAGTTACAGTTTGA 4683 43.41 MADEQPSAANRRRSRGSEAAARLQALERLKAIRSGGRRSESGAFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCTSDESDGELEKPKKRKAEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTGRDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGQIGAIPVSRTFAPVPAVKCEGLTAQSLTLTGGSESIKDTENGNSGMTRVITSSDLEPVRNGVEVQGNGETKEFDEKEGFNSQINLDPTVQSHNSSIKEDVHEDNRPIMIETKAELLVKKEPACTLNAKISDEKDPALSATAGWQAVRSEGSGNVDSAAEISEKSDFDIDADGSLPFYIVDAHEELFGAIMGTVYLFGKVKAGDTYHSCCVVVKNMQRCIYAIPSASFLHSDEMMKLQNDAEQSRLSPTDLRAKLQEVTAGLKNEIAKQLLDLNVSTFSMTPVQRKYAFERQDIPAGENYVLKINYPFKHPPLPADLKGDSFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPGSQRVSWCKFEVIVDSPKDVKTSTSSSKTLEIPSMIVSAINIKTIINEKQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESKDRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSTWSKIGRLKRSVMPKLGKGGSIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHDIPRMYQASESLMNLGALAEDLIVEVGQIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKISSYVKEKKMAKKRMNHSSEEKNVDEFDLDDANVEAPNPESGKGKKGSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERPPDGVVPRLPSSKVTGVLPELLKNLVQRRRMVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDISKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVIESIHDSLLKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSTGIAQRARHPDELKKEDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSSEVYRSDVSSSLLCSVNDEERYQGCIPLTLTCPSCSGTFECPAIFNSIYKSTHGTQERPVDEPTSKFWNNLHCPKCPDEANAGRMTPGMIANQVKRQAERFISMYYNGLLMCEDETCKHATRAVSLRLKGNSEKGTICPNYPNCNGRLIRKYTEADLYKQLAYFSYILDTVRCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSIRERSAYGWLQLQDFVVTV 1560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30183034 30200429 - Maker00031209 Lcy8g0834 639726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0834 1560 Gene3D - 366 565 - -
Lcy8g0834 1560 Gene3D - 579 908 IPR036397 GO:0003676(InterPro)
Lcy8g0834 1560 Gene3D DNA Polymerase alpha, zinc finger 1351 1545 IPR038256 -
Lcy8g0834 1560 FunFam DNA polymerase 1351 1546 - -
Lcy8g0834 1560 Pfam DNA polymerase family B, exonuclease domain 519 773 IPR006133 -
Lcy8g0834 1560 Pfam DNA polymerase family B 852 1313 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Lcy8g0834 1560 Gene3D Helix hairpin bin 995 1038 - -
Lcy8g0834 1560 PRINTS DNA-directed DNA-polymerase family B signature 1078 1086 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lcy8g0834 1560 PRINTS DNA-directed DNA-polymerase family B signature 949 962 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lcy8g0834 1560 PRINTS DNA-directed DNA-polymerase family B signature 1025 1037 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lcy8g0834 1560 MobiDBLite consensus disorder prediction 1 20 - -
Lcy8g0834 1560 CDD DNA_polB_alpha_exo 579 843 - -
Lcy8g0834 1560 Gene3D Palm domain of DNA polymerase 919 1142 IPR023211 -
Lcy8g0834 1560 FunFam DNA polymerase 1156 1342 - -
Lcy8g0834 1560 SUPERFAMILY Ribonuclease H-like 361 880 IPR012337 -
Lcy8g0834 1560 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Lcy8g0834 1560 MobiDBLite consensus disorder prediction 894 932 - -
Lcy8g0834 1560 NCBIfam DNA polymerase (pol2) 51 1310 - -
Lcy8g0834 1560 MobiDBLite consensus disorder prediction 88 124 - -
Lcy8g0834 1560 FunFam DNA polymerase 406 532 - -
Lcy8g0834 1560 SUPERFAMILY DNA/RNA polymerases 876 1328 IPR043502 -
Lcy8g0834 1560 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1558 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Lcy8g0834 1560 FunFam DNA polymerase 990 1039 - -
Lcy8g0834 1560 FunFam DNA polymerase 579 906 - -
Lcy8g0834 1560 Gene3D - 406 532 - -
Lcy8g0834 1560 Pfam DNA Polymerase alpha zinc finger 1352 1556 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Lcy8g0834 1560 CDD POLBc_alpha 925 1328 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
Lcy8g0834 1560 SMART polmehr3 579 1092 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lcy8g0834 1560 Coils Coil 1106 1126 - -
Lcy8g0834 1560 MobiDBLite consensus disorder prediction 76 136 - -
Lcy8g0834 1560 MobiDBLite consensus disorder prediction 1 18 - -
Lcy8g0834 1560 Gene3D - 1156 1341 IPR042087 -
Lcy8g0834 1560 ProSitePatterns DNA polymerase family B signature. 1080 1088 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1846 Lcy-Chr4:44518036 Lcy8g0834 Lcy-Chr8:30183034 2.39E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0834 K02320 - csv:101211201 2655.94