Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g0839 | ATGGAGTGGGTTCGAGGAGACGAACTGGGTCGTGGAAATTTTGCGACGATCAATTTAGCAAAGCTCACAAAGGGCTTCGATCAGTTTCCGCCATTAATGGCGGTGAAATCCTCTGTTTCTGTATCCTCTGTTTCGCTGAAGAACGAGAAGCACATTTTGGATCGAATTGGGAGTTGCCCACAAATCGTTTCTTGTTTTGGCGATGGATTCAGTGTCGAAAGAGATGGGGAGAAGTATTATAATCTGTTCTTGGAGTACGCCAATGGCGGAAGCCTTGCGGATGCTGTGAAAATCCACGGCGGCGGGTTGCCGGAATTTGATGTTCGACGGTACACGAGGGCGATTCTTCGTGGGCTCCGGCATATTCACGCTAACGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGTGAGGTTAAGATCGCTGATTTCGGGCTCGCGAGAGTGGCGACGGCGGCGAAAACAGAGGAAACGGAGGAGAAATTTGAGTGGAGGGGGACTCCGATGTATATGTCGCCGGAGACGGTGAACGGCGGGGAGTATGCGCCGCCGTGTGATGTTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGCCGGGAAGCCAGCGTGGAGGGTTCGGCCGGAAACGGATATATTTGGGCTGATGATGAGGATCGGAGTCGGCGACGAAGTGCCGGAGCTGCCGGAGAATTTATCGGCGGATGGGACAGATTTTCTCCGGCGGTGTTTCGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAATCACCCATTCATGGCCGGTGGCGGTGACACTGTTGCATTGAAGGAATCGGAACCGGCAACGGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTTGTTTGTTCCGACCAAGGTTCTGATGAGTTGAGTTTCTGTTCTTCTTATTCCTCGCCGGAGATAATGAGTAGACTACAGCGGCTGGTGACGGAGAAGCCTTTGGATTGGTCTGTTATGGGAAGTTGGGTCACAGTAAGGTGA | 1032 | 52.71 | MEWVRGDELGRGNFATINLAKLTKGFDQFPPLMAVKSSVSVSSVSLKNEKHILDRIGSCPQIVSCFGDGFSVERDGEKYYNLFLEYANGGSLADAVKIHGGGLPEFDVRRYTRAILRGLRHIHANGFVHCDLKLSNVLVFGNGEVKIADFGLARVATAAKTEETEEKFEWRGTPMYMSPETVNGGEYAPPCDVWALGCAVVEMVAGKPAWRVRPETDIFGLMMRIGVGDEVPELPENLSADGTDFLRRCFVKDPRKRWTAEMLLNHPFMAGGGDTVALKESEPATESPTGPFDFPEFVCSDQGSDELSFCSSYSSPEIMSRLQRLVTEKPLDWSVMGSWVTVR | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 30343544 | 30344575 | - | Maker00031163 | Lcy8g0839 | 639731 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g0839 | 343 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 294 | - | - | |
Lcy8g0839 | 343 | ProSiteProfiles | Protein kinase domain profile. | 3 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g0839 | 343 | SMART | serkin_6 | 3 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g0839 | 343 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 270 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lcy8g0839 | 343 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 299 | IPR011009 | - | |
Lcy8g0839 | 343 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 127 | 139 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy8g0839 | 343 | CDD | STKc_MAPKKK | 2 | 268 | - | - | |
Lcy8g0839 | 343 | Pfam | Protein kinase domain | 5 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g0839 | 343 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 36 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0983 | Lcy-Chr1:8666382 | Lcy8g0839 | Lcy-Chr8:30343544 | 7.16E-145 | dispersed | |
Lcy3g1811 | Lcy-Chr3:45318666 | Lcy8g0839 | Lcy-Chr8:30343544 | 3.30E-63 | dispersed | |
Lcy3g1812 | Lcy-Chr3:45321450 | Lcy8g0839 | Lcy-Chr8:30343544 | 5.29E-62 | dispersed | |
Lcy3g1973 | Lcy-Chr3:46876828 | Lcy8g0839 | Lcy-Chr8:30343544 | 2.63E-69 | dispersed | |
Lcy3g1974 | Lcy-Chr3:46881263 | Lcy8g0839 | Lcy-Chr8:30343544 | 3.24E-60 | dispersed | |
Lcy8g0839 | Lcy-Chr8:30343544 | Lcy8g1430 | Lcy-Chr8:40953190 | 1.24E-61 | dispersed | |
Lcy1g2091 | Lcy-Chr1:28152621 | Lcy8g0839 | Lcy-Chr8:30343544 | 3.10E-06 | wgd | |
Lcy1g1974 | Lcy-Chr1:24160406 | Lcy8g0839 | Lcy-Chr8:30343544 | 1.80E-17 | wgd | |
Lcy1g2644 | Lcy-Chr1:49806837 | Lcy8g0839 | Lcy-Chr8:30343544 | 4.78E-44 | wgd | |
Lcy7g1603 | Lcy-Chr7:31271690 | Lcy8g0839 | Lcy-Chr8:30343544 | 6.14E-10 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66102 | None | None | None | None | Lcy | PK |
Pathway information
