Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0839 ATGGAGTGGGTTCGAGGAGACGAACTGGGTCGTGGAAATTTTGCGACGATCAATTTAGCAAAGCTCACAAAGGGCTTCGATCAGTTTCCGCCATTAATGGCGGTGAAATCCTCTGTTTCTGTATCCTCTGTTTCGCTGAAGAACGAGAAGCACATTTTGGATCGAATTGGGAGTTGCCCACAAATCGTTTCTTGTTTTGGCGATGGATTCAGTGTCGAAAGAGATGGGGAGAAGTATTATAATCTGTTCTTGGAGTACGCCAATGGCGGAAGCCTTGCGGATGCTGTGAAAATCCACGGCGGCGGGTTGCCGGAATTTGATGTTCGACGGTACACGAGGGCGATTCTTCGTGGGCTCCGGCATATTCACGCTAACGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGTGAGGTTAAGATCGCTGATTTCGGGCTCGCGAGAGTGGCGACGGCGGCGAAAACAGAGGAAACGGAGGAGAAATTTGAGTGGAGGGGGACTCCGATGTATATGTCGCCGGAGACGGTGAACGGCGGGGAGTATGCGCCGCCGTGTGATGTTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGCCGGGAAGCCAGCGTGGAGGGTTCGGCCGGAAACGGATATATTTGGGCTGATGATGAGGATCGGAGTCGGCGACGAAGTGCCGGAGCTGCCGGAGAATTTATCGGCGGATGGGACAGATTTTCTCCGGCGGTGTTTCGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAATCACCCATTCATGGCCGGTGGCGGTGACACTGTTGCATTGAAGGAATCGGAACCGGCAACGGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTTGTTTGTTCCGACCAAGGTTCTGATGAGTTGAGTTTCTGTTCTTCTTATTCCTCGCCGGAGATAATGAGTAGACTACAGCGGCTGGTGACGGAGAAGCCTTTGGATTGGTCTGTTATGGGAAGTTGGGTCACAGTAAGGTGA 1032 52.71 MEWVRGDELGRGNFATINLAKLTKGFDQFPPLMAVKSSVSVSSVSLKNEKHILDRIGSCPQIVSCFGDGFSVERDGEKYYNLFLEYANGGSLADAVKIHGGGLPEFDVRRYTRAILRGLRHIHANGFVHCDLKLSNVLVFGNGEVKIADFGLARVATAAKTEETEEKFEWRGTPMYMSPETVNGGEYAPPCDVWALGCAVVEMVAGKPAWRVRPETDIFGLMMRIGVGDEVPELPENLSADGTDFLRRCFVKDPRKRWTAEMLLNHPFMAGGGDTVALKESEPATESPTGPFDFPEFVCSDQGSDELSFCSSYSSPEIMSRLQRLVTEKPLDWSVMGSWVTVR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30343544 30344575 - Maker00031163 Lcy8g0839 639731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0839 343 Gene3D Transferase(Phosphotransferase) domain 1 2 294 - -
Lcy8g0839 343 ProSiteProfiles Protein kinase domain profile. 3 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0839 343 SMART serkin_6 3 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0839 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 270 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy8g0839 343 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Lcy8g0839 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g0839 343 CDD STKc_MAPKKK 2 268 - -
Lcy8g0839 343 Pfam Protein kinase domain 5 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g0839 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0983 Lcy-Chr1:8666382 Lcy8g0839 Lcy-Chr8:30343544 7.16E-145 dispersed
Lcy3g1811 Lcy-Chr3:45318666 Lcy8g0839 Lcy-Chr8:30343544 3.30E-63 dispersed
Lcy3g1812 Lcy-Chr3:45321450 Lcy8g0839 Lcy-Chr8:30343544 5.29E-62 dispersed
Lcy3g1973 Lcy-Chr3:46876828 Lcy8g0839 Lcy-Chr8:30343544 2.63E-69 dispersed
Lcy3g1974 Lcy-Chr3:46881263 Lcy8g0839 Lcy-Chr8:30343544 3.24E-60 dispersed
Lcy8g0839 Lcy-Chr8:30343544 Lcy8g1430 Lcy-Chr8:40953190 1.24E-61 dispersed
Lcy1g2091 Lcy-Chr1:28152621 Lcy8g0839 Lcy-Chr8:30343544 3.10E-06 wgd
Lcy1g1974 Lcy-Chr1:24160406 Lcy8g0839 Lcy-Chr8:30343544 1.80E-17 wgd
Lcy1g2644 Lcy-Chr1:49806837 Lcy8g0839 Lcy-Chr8:30343544 4.78E-44 wgd
Lcy7g1603 Lcy-Chr7:31271690 Lcy8g0839 Lcy-Chr8:30343544 6.14E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66102 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0839 - - - 0.0