Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0849 ATGCATCCGGATGATCACCAGCAGCAGCCGTTGTTGGAGGAGGAAGATGAAGAAACTGCCTATGATTTAACGGAGAAGGTTGTGGTAATTGGGATCGATGAAGAGGAGTCCGATTCCGACGGGGGTTTGCCGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACAGGGCCTGGGTTCTTGATGAGCATAGCATTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCAGGTGCTATTGCAGGGTATTCTTTGCTGTGGCTTCTGCTTTGGGCTACGGCTATGGGGCTTTTGATCCAGTTGCTTTCGGCCAGGCTTGGCGTTGCCACTGGCAGGCACTTGGCCGAGCTGTGTAGAGAAGAGTACCCAACTTGGGCGAGGATTGTGCTGTGGGTTATGGCGGAATTGGCACTCATTGGGGCTGATATACAGGAAGTTATAGGGAGTGCTATTGCTATTAAGATTTTGAGTAATGGGGCTTTGCCTCTTTGGGCTGGAGTCATCATCACTGCTTTGGATTGTTTTATCTTCCTGTTTCTTGAGAATTATGGTGTGAGGAAATTGGAGGCTGTTTTTGCTGTTCTTATTGCTACTATGGCACTCTCGTTTGCTTGGATGTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCTGTTGCTGTTGTGGGCTGTATCATTATGCCTCATAATGTGTTTCTGCACTCTGCTCTTGTACAGTCGCGAGATGTCGATCCGAGCAAGAAAGGGCGGGTCCGAGAAGCTCTTAGATACTACTCTATTGAATCCACTCTTGCCCTTCTTGTCTCCTTCATCATCAACTTGTTTGTTACTACTGTGTTTGCTAAAGCTTTCTATGGCACGGATATAGCAAGTAGCATAGGTCTCGTAAATGCAGGCGAATATCTTCAAGATAAATATGGTGGAGGGCTTTTCCCCATTTTGTACATCTGGGCTATTGGTTTGTTAGCTGCTGGACAAAGTAGCACCATTACTGGTACCTATGCAGGACAGTTTATCATGGGAGGCTTCCTGAACTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATTACTCGAAGCTTTGCAATTGTGCCGACTATGATTGTTGCTCTCTTGTTCGAAACTTCTGACTCGATGGTCGATGTTCTGAATGAATGGCTCAATGTCCTCCAGTCAATTCAGATCCCCTTTGCTCTGATTCCTCTTCTTTGTTTGGCTTCTAAGGAACATCTAATGGGCACTTTCAGAATTGGCCCCGTTTTAAAGATGTTATCTTGGCTAGTGGCAGTCCTGGTGATGGCCATTAACGGGTATCTTTTGGTGAGCTTCTTCACATCAGAGATGAATGGAGCACTCGTTGCCATTTCTATGTTCGTCTTCATCGCTGCATATCTTGCCTTTGTTGTTTACCTCGTCTATCGAAGCATTTCCTTCTCAAGTTGGCACAACTTCATAAGACGGAAGACTTACACAGTACCACAAACTGACTGA 1536 45.57 MHPDDHQQQPLLEEEDEETAYDLTEKVVVIGIDEEESDSDGGLPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVDPSKKGRVREALRYYSIESTLALLVSFIINLFVTTVFAKAFYGTDIASSIGLVNAGEYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALLFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGTFRIGPVLKMLSWLVAVLVMAINGYLLVSFFTSEMNGALVAISMFVFIAAYLAFVVYLVYRSISFSSWHNFIRRKTYTVPQTD 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30662609 30666421 - Maker00031155 Lcy8g0849 639741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0849 511 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 Pfam Natural resistance-associated macrophage protein-like 72 433 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 NCBIfam Nramp family divalent metal transporter 56 425 - -
Lcy8g0849 511 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lcy8g0849 511 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 31 492 IPR001046 GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0522 Lcy-Chr12:6358353 Lcy8g0849 Lcy-Chr8:30662609 1.99E-108 dispersed
Lcy12g0523 Lcy-Chr12:6368431 Lcy8g0849 Lcy-Chr8:30662609 2.27E-107 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0849 K21398 - csv:101211711 938.717