Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0853 ATGGATATGTTCTTCCTTTCCATTTCTCTCTCTCTCTTCTCTCTCCTTCTTGCCTTGACCTTTCTTCTTCGATCTCACCGCCAAATTAACCTTCCACCAACCCCACTTTTTTGTCTTCCAATTATCGGCCATCTCCATCTCATCAAACATCCCGTTCATCGAATCCTTCACAACCTCTCCAAAAAGTACGGCCACGTCTTCTCTCTCCGATTCGGCTCACGCCTCGTTGTAGTCGTATCATCTCCTTCCGTTGCGCAAGAATGCTTTACAAAGAACGATATCCTTCTCGCCAATCGCCCATTGCTGGGCACTGGAAAGCACTTGGCATACAACCATACCACCATGGCGGTCGCCCCTTACGGTGAACACTGGCGGAACCTTCGCCGGATTGGCGCCCTCGAGATTTTCTCCACAAGCCGCCTGAATCTCTTCTTGGGAGTTCGAGAGGATGAAGTTAAGCGCTTGATGCTTAGGCTGTGTGGGAGTTCGTTGGAAGAATTCAAGCTGGTGGAGCCGGAGTCGATGTTCTTAGATCTTATGTACAATGTTATTATGAAAATGGTGGCTGGGAAGAAGCCTTATCAAGAGGATAAGGGACAATCGAGGGAGTTTAGAGAGGTGGTGACACAGATTATGGCGGTTGGTGGGACAACGAATCCAGGAGACTTCATACCCATATGGAATTGGATCGATCCGACTGGTTTGGAGAAGAAGATAATGAAACTTGGACATACAATGGATGAACTTCTCCAAGAATTAGTTGATGGGAAGAGAAATCAAGAAGATGAAGAGAACACTATGATTGGTCGTTTACTTCATTTGCAGAAAACTGAGCCTGAAAATCATAGTGACCAAATTATCAAAGGCCTAATACAAATCATATTGATAGCAGGGATTGACACGACAGCCGTAACCTTAGAGTGGGCGCTCTCTCATCTACTCAACAACCCAGATGTGTTGGAGAAAGCAAAAGCTGAGATAGATAATTCTATTGGACAGGAGCGCTTGGTCAACGAAGCAGATTTGTCGAGTTTGAATTATCTGCAGGGAATCATTTCTGAGACTCTACGACTGACCCCAGCAGCTCCTTTGCTTGTGCCACATTGCGCTTCTGAAGACTGCAAAATTGGAGGGTATGATGTACCACGCGACACAATTGTGTTGATTAATGCTTGGGCTATTCATAGAGATCCCAACCTATGGGAAGATGCCACAAGTTTTAAGCCCGAAAGATATACAAATCCTATTGGAGTTGACTCATATAAACTATTACCATTTGGATCGGGGAGGAGAGCTTGCCCTGGAATGGGAATAGCTCAACGAGTGGCTAGCTTGACTTTGGCATCGTTGATTCAATGCTTTGAGTGGGAAAGAGAGGGCACTTCATTGGTGGACATGAGTGAAGGTGAAGGTATTACAATGCCAAAAGCTCAACGATTGGTGGCCAAATGTAAACCACGTCCGATCATGAAAGCTATTTTCTGCGATTCAGTTGATCACAACATTTGA 1509 45.33 MDMFFLSISLSLFSLLLALTFLLRSHRQINLPPTPLFCLPIIGHLHLIKHPVHRILHNLSKKYGHVFSLRFGSRLVVVVSSPSVAQECFTKNDILLANRPLLGTGKHLAYNHTTMAVAPYGEHWRNLRRIGALEIFSTSRLNLFLGVREDEVKRLMLRLCGSSLEEFKLVEPESMFLDLMYNVIMKMVAGKKPYQEDKGQSREFREVVTQIMAVGGTTNPGDFIPIWNWIDPTGLEKKIMKLGHTMDELLQELVDGKRNQEDEENTMIGRLLHLQKTEPENHSDQIIKGLIQIILIAGIDTTAVTLEWALSHLLNNPDVLEKAKAEIDNSIGQERLVNEADLSSLNYLQGIISETLRLTPAAPLLVPHCASEDCKIGGYDVPRDTIVLINAWAIHRDPNLWEDATSFKPERYTNPIGVDSYKLLPFGSGRRACPGMGIAQRVASLTLASLIQCFEWEREGTSLVDMSEGEGITMPKAQRLVAKCKPRPIMKAIFCDSVDHNI 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30776440 30778847 + Maker00031142 Lcy8g0853 639745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0853 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy8g0853 502 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 Pfam Cytochrome P450 33 477 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 Coils Coil 246 266 - -
Lcy8g0853 502 SUPERFAMILY Cytochrome P450 32 487 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 Gene3D Cytochrome P450 20 490 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy8g0853 502 FunFam Cytochrome P450 family protein 23 490 - -
Lcy8g0853 502 PANTHER CYTOCHROME P450 82C3-RELATED 15 487 IPR050651 -
Lcy8g0853 502 CDD CYP81 64 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0846 Lcy-Chr8:30508446 Lcy8g0853 Lcy-Chr8:30776440 3.20E-268 dispersed
Lcy8g0847 Lcy-Chr8:30592081 Lcy8g0853 Lcy-Chr8:30776440 6.94E-274 dispersed
Lcy8g0853 Lcy-Chr8:30776440 Lcy13g1039 Lcy-Chr13:22711472 8.89E-163 dispersed
Lcy8g0851 Lcy-Chr8:30720861 Lcy8g0853 Lcy-Chr8:30776440 4.90E-256 proximal
Lcy4g1578 Lcy-Chr4:39810091 Lcy8g0853 Lcy-Chr8:30776440 8.10E-58 wgd
Lcy7g1694 Lcy-Chr7:34189017 Lcy8g0853 Lcy-Chr8:30776440 1.96E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0853 K13260 - csv:101204413 796.964