Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0896 ATGGCGGTGGAGCTCCTCACAGCCTTCACCAACGCCCAGCTCTCCGCCCCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCCTCCGGCCTCGACACCCTCAAAAAGCTCGTCTCATTACTCTCCCACTCTCCCCCTTCCAATCTCGACTCCGATTGCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCAAGAAGGCCATTTCTCTCCTCGGCCGCTCCCCCCGAACTGGCCACGCCCGATTCCGCCGTGCCCCTTTGGATTCCTCTAAAGTTTACAACGCCACTCCCATTCAACAAATTCCTCCTCCCCTTGAGCGCCGCGAATCGGCCACCACCATCAATTTCTCTTACTCCTCTGCTCCTAGCGGCTCCTTCCTCACCTCGCTTGCCGGTGCCGACTCTGAAATTAAGGTCCAACACCAACCCTCCTCTTCTTTTCAGATCACCGATCTTTCCAGAGTTTCTTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGGAAGTGTGGCTCTGAGAATTTGGGCTCTGGGAAGTGCAGTGGATCCTCTGGCGGTCGATGCCACTGCTCTAAGAAGAGAAAAATGAGGTTGAAAAGGGTGGTGAGAGTTCCAGCCATAAGCTCGAAGAACGCGGATATTCCTCCTGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAGTGCAGCAGCTTAAGAGGATGTCCAGCTAGAAAGCACGTCGAGAGAGCCTCGGATGATCCATCTATGTTAATAGTGACTTATGAAGGCGACCATAATCACTCTCAATCAGTTGCAGAAGCCTCAAGTCTCATCCTTGAATCTTGGTGA 867 52.71 MAVELLTAFTNAQLSAPMDQDSAVQEAASGLDTLKKLVSLLSHSPPSNLDSDCQAVANAAVSHFKKAISLLGRSPRTGHARFRRAPLDSSKVYNATPIQQIPPPLERRESATTINFSYSSAPSGSFLTSLAGADSEIKVQHQPSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCSGSSGGRCHCSKKRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32266610 32269384 + Maker00001584 Lcy8g0896 639788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0896 288 SMART WRKY_cls 215 275 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g0896 288 FunFam WRKY transcription factor 65 199 276 - -
Lcy8g0896 288 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g0896 288 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 278 IPR044810 GO:0003700(InterPro)
Lcy8g0896 288 Pfam Plant zinc cluster domain 167 213 IPR018872 -
Lcy8g0896 288 SUPERFAMILY WRKY DNA-binding domain 211 275 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g0896 288 Gene3D WRKY domain 199 276 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g0896 288 ProSiteProfiles WRKY domain profile. 210 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0971 Lcy-Chr1:8514721 Lcy8g0896 Lcy-Chr8:32266610 9.96E-110 dispersed
Lcy7g1090 Lcy-Chr7:11721874 Lcy8g0896 Lcy-Chr8:32266610 9.48E-22 dispersed
Lcy8g0896 Lcy-Chr8:32266610 Lcy9g2076 Lcy-Chr9:45518531 1.58E-83 dispersed
Lcy4g0775 Lcy-Chr4:9260395 Lcy8g0896 Lcy-Chr8:32266610 1.23E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20492 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0896 - - - 0.0