Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0946 ATGATTTCCGTTGCCCCACCGTGCGACGGTCGGCAGCCCGAACTCTCCCCCAAAATCTCCTCTCCACCGCCGCCGACGACCCATGTTTTCCGATCGAAGTTACCGGATATTGCAATCCCCAATCATCTCCCTCTTCACAGCTACTGTTTTCAAAAGCTCTCTGAATTCTCCGACCGCCCTTGTTTGATCGTCGGCTCCACCGGAAAATCCTATTCCTTCTCCGAAACCCATCTGTTCTCGAGGAAGGTCGCCGCCACTTTCTCTAAACTCGGAATTAAGAAGGGCGATGTAATTATGATTCTCCTCCAGAACTCTGCGGAATTCGTTTTTTCTTTCATGGGTTCCTCCATGATCGGCGCCGTCGCCACCACCGCAAATCCGTATTACACGGCGGCGGAGATTTCCAAGCAGCTGAAGTCCTCCGGTGCCAAATTGGTTGTTACTTACTCGCATTGCATCGACAAGCTCCGAGAATCCGGTGAGGATCTCACCATCGTCACTGTTGATGACCCGCCGGAGAACTGTCTGAGCTTTTCGATGGTTTATGACGCCGACGAAAACGACGTCCCTACGGTGGAGATCAACCAAAATGACGCCGTTTCGCTACCGTTCTCCTCCGGCACGACCGGGCTCCCCAAGGGGGTGATTTTGACCCATAGGAGTATGGTATCAAGTGTGGCTCAACAGGTAGATGGAGAGAATCCGAACGTGTATTTGAGAAAGAACGACGTAGTTTTATGTGTGCTACCAATGTTCCACATATTCGCCTTGAGTAGCATTGTTTTGATTTCAATTAGGTCAGGGGCAACACTACTATTGATGGAGAAGTTCGAAATAGAGACATTGTTACGACTGATAGAGAGGCATCGGGTGACGGTGGCGACGGTGGTGCCACCGTTGGTGGTGGCGCTGGTGAAGAACCCCAAGGTTGCGGATTGTGACTTGAGCTCGATCAGAATGGTGTTTTCCGGGGCGGCGCCACTCCGAAAGGAGTTGGAGGAGGCCCTCATGCGGAGGATCCCTCAAGCAATTTTTGGTCAGGGATATGGGATGACAGAGGCGGGACCCGTGCTAAGCATGTGCTCGGCTTTTGCAAAGGAGCCACCAATGCCAACAAAGTCAGGATCTTGTGGTAGAGTGGTGAGAAACTCCAAGCTCAAAATCATTGACCCACAAACTGGTGCATCCCTTAGCTATAATCAACCCGGAGAGATTTGGGTTCGTGGTCCACAAATTATGAAAGGATATTTGAACGACCCGGTGGCCACGTCACTGACCGTCGACGCGGAGGGTTGGCTTCATACGGGTGACATTGGCTACATTGACGATGAAGAAGAAATTTTTATTGTTGACAGAGTCAAAGAGATCATTAAATTTAAAGGATTCCAGGTGGCACCAGCGGAGTTGGAGGCCCTTCTCGTAAACCATCCCTCTATTGTAGATGCAGCTGTGGTCCCGCAAAATGATGACGTTGCTGGTGAAGTTCCAGTGGCTTTCGTGGTTGGATCAACGGATAATGAACTGACCGAGGAGGCAGTAAAAGAATTCATAGCAAAACAGGTTGTGTTCTACAAGAGATTGCAGAAAGTTTACTTTGTGCAGACAATTCCAAAATCACCCTCAGGGAAGATCTTGAGAAAGGAACTCAAAGCCAAGCTCTCAGTCTCACATGCTGCCTTCTAA 1683 49.97 MISVAPPCDGRQPELSPKISSPPPPTTHVFRSKLPDIAIPNHLPLHSYCFQKLSEFSDRPCLIVGSTGKSYSFSETHLFSRKVAATFSKLGIKKGDVIMILLQNSAEFVFSFMGSSMIGAVATTANPYYTAAEISKQLKSSGAKLVVTYSHCIDKLRESGEDLTIVTVDDPPENCLSFSMVYDADENDVPTVEINQNDAVSLPFSSGTTGLPKGVILTHRSMVSSVAQQVDGENPNVYLRKNDVVLCVLPMFHIFALSSIVLISIRSGATLLLMEKFEIETLLRLIERHRVTVATVVPPLVVALVKNPKVADCDLSSIRMVFSGAAPLRKELEEALMRRIPQAIFGQGYGMTEAGPVLSMCSAFAKEPPMPTKSGSCGRVVRNSKLKIIDPQTGASLSYNQPGEIWVRGPQIMKGYLNDPVATSLTVDAEGWLHTGDIGYIDDEEEIFIVDRVKEIIKFKGFQVAPAELEALLVNHPSIVDAAVVPQNDDVAGEVPVAFVVGSTDNELTEEAVKEFIAKQVVFYKRLQKVYFVQTIPKSPSGKILRKELKAKLSVSHAAF 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33605182 33611367 - Maker00001858 Lcy8g0946 639838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0946 560 Pfam AMP-binding enzyme C-terminal domain 468 543 IPR025110 -
Lcy8g0946 560 FunFam Long-chain-fatty-acid--CoA ligase FadD 31 454 - -
Lcy8g0946 560 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 550 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Lcy8g0946 560 MobiDBLite consensus disorder prediction 1 27 - -
Lcy8g0946 560 SUPERFAMILY Acetyl-CoA synthetase-like 36 552 - -
Lcy8g0946 560 Pfam AMP-binding enzyme 53 417 IPR000873 -
Lcy8g0946 560 FunFam 4-coumarate--CoA ligase 2 455 556 - -
Lcy8g0946 560 CDD 4CL 39 549 - -
Lcy8g0946 560 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Lcy8g0946 560 Gene3D - 25 453 IPR042099 -
Lcy8g0946 560 Gene3D - 454 556 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1407 Lcy-Chr12:31599341 Lcy8g0946 Lcy-Chr8:33605182 3.18E-37 dispersed
Lcy12g1408 Lcy-Chr12:31603043 Lcy8g0946 Lcy-Chr8:33605182 0 dispersed
Lcy4g1684 Lcy-Chr4:42518512 Lcy8g0946 Lcy-Chr8:33605182 9.29E-207 dispersed
Lcy5g0840 Lcy-Chr5:13474378 Lcy8g0946 Lcy-Chr8:33605182 7.00E-195 dispersed
Lcy7g0035 Lcy-Chr7:292427 Lcy8g0946 Lcy-Chr8:33605182 1.30E-126 dispersed
Lcy7g0614 Lcy-Chr7:5582729 Lcy8g0946 Lcy-Chr8:33605182 3.17E-113 dispersed
Lcy8g0946 Lcy-Chr8:33605182 Lcy10g0019 Lcy-Chr10:322037 7.49E-10 dispersed
Lcy11g0389 Lcy-Chr11:6730451 Lcy8g0946 Lcy-Chr8:33605182 3.53E-107 wgd
Lcy5g0839 Lcy-Chr5:13457090 Lcy8g0946 Lcy-Chr8:33605182 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0946 K01904 - csv:101221344 921.383