Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g0947 | ATGCCGAATATGGACGCTCTCTTTGTCCCCATCACCTTCTCCGAGCCTCCACACTCTTTATTAACCCGCACCACCAACGCCGGAGCTCAATTGAGGGTTGGACCTGTTTCCCGCTTCTCGCTGCGTTCTTCTGTAATTCAGCTCAAGCGCTTTCCTATTCGCTGTAAGAAGCTTTCCTATTCTCGCTTTGGTCGCTTTCGTTGCGCCGCCGAGGCCTCCAATCACCGGCACGGTCACCATCACGGCCATCATCACCACCACCATGGCTGCCAGCACCATTGCGGTGGTGACGGTGATGGAGTAGAGCTGACTGGAGCCCAGAAGGCGTTTGTTCGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTATTTGAGGGAGCATCTACACTTGTGTTGCGGTTCTGCTGCTTTGTTTATCACTGCCGCTGCTACTCCTTATTTGGTGCCTAAACCTGCTGTGAAGCCTCTACAGAATGTTTTCATTGCTGTTGCTTTCCCTTTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATTAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCCCTTGCAGCCTTTGCATCAATATTTATGGGGAACCCGGTAGAAGGAGGACTACTTCTTGTGATGTTTAATCTGGCGCATATTGCTGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAAGGAGTTGAAGGAAAGTCATCCAGATTTTGCTCTTGTTCTGGATGTGAATGATGATAACCTTCCTGATACTTCAGATCTGGAGCATAGAAGGGTGCCAGTGCGTGATGTTGAAGTGGGCTCATATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAAGTTTATCGAGGTTGTGCTACAATCACTGTTGAGCACTTGACAGGAGAAGTCAAACCGTTGCAAATAAAGGTTGGGGAAAGAGTTCCTGGTGGAGCAAGAAACTTGGACGGTAGGATCATAGTGAAGGCTACAAAAACATGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAGCTACAGAGGTGGCTCGATGAATTTGGTGAGAATTACAGCAAGGTTGTTGTAGTTTTATCTGTAGCTGTTGCCCTCATTGGACCATTATTGTTCAAGTGGCCATTCATATGTACACCAGGTTTCAGAGGATCAGTTTATAGAGCACTTGGGCTTATGGTAGCCGCATCACCATGTGCACTGGCTGCTGCTCCATTGGCATACGCTATTGCAATAAGTTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACATGTACTTGATGCTATGGCTTCTTGTCACACTGTTGCATTTGATAAAACCGGGACATTGACTACAGGAGGACTTGTATTTAAAGCTATAGAACCCATTTATGGGCATACGATTGGAGGAGATAAATCACATTTAGCTTCCTGTTGCATACCCAGCTGTGAAAAAGAAGCCCTTGCAGTGGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCCGTAGTAGATCATAGTGTGGGGAAAGACCTTCCTTCTATTTCTGTTGAAAGTTTTGAATATTTCCCTGGAAGAGGTCTCATTGCAACTCTGCATGGCATTAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCCCTTGGTTCTGTGGATTTCATCACTTCCTTTTGCAAATCTGAAAATGAATCAAGGAAGATCAAGGAAGCTGTTAGAGGGTCATCATATGGCAGTGAATTTGTTCATGCTGCTCTTTCAGTTGATCAAAAGGTAACACTGATTCACCTTGAGGATCAGCCTCGACCTGGAGTCTTAGATGCAATAGCTGAACTACAAGATCAGGCAAAACTCCGTGTTATGATGTTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCGAATGCTGTGGGCATAAATGAAGTTTACTACAGTCTTAAGCCTGAGGACAAACTTGCTCATGTGAAGGAAATATCAAGGGAGATGGGGGGTGGTCTGATCATGGTAGGCGAAGGTATAAATGATGCACCTGCACTGGCTGCAGCTACTGTGGGAATAGTTCTTGCCCATCGTGCAAGCGCTACTGCAACAGCCGTTGCAGATGTCCTGCTTCTTCAGGACAGTATTTCTGGTGTACCATTCTGTATTGCCAAATCTCGTCAGACGACTTCATTGGTCAAGCAAAATGTGACCCTTGCCTTGTCATCTATCCTTCTAGCCTCGCTCCCATCTGTTTTGGGGTTCCTTCCCTTGTGGCTAACGGTCCTTCTACACGAGGGTGGCACTCTCCTGGTTTGCCTGAACTCCATACGTGCTCTAAATCAGCCCTCATGGTCATGGAAGCAAGATTTTCACAATCTGATACACGACACCAGATCGAAACTGCACACGACACCAGAAACTAGCTCTGGTGCCATTCAAACTGCACCTTTGTAG | 2481 | 46.23 | MPNMDALFVPITFSEPPHSLLTRTTNAGAQLRVGPVSRFSLRSSVIQLKRFPIRCKKLSYSRFGRFRCAAEASNHRHGHHHGHHHHHHGCQHHCGGDGDGVELTGAQKAFVRFAEAIRWTDLANYLREHLHLCCGSAALFITAAATPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPVEGGLLLVMFNLAHIAEEYFTKQSMIDVKELKESHPDFALVLDVNDDNLPDTSDLEHRRVPVRDVEVGSYILVGAGESVPVDCEVYRGCATITVEHLTGEVKPLQIKVGERVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSVYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHTIGGDKSHLASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVESFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKEAVRGSSYGSEFVHAALSVDQKVTLIHLEDQPRPGVLDAIAELQDQAKLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGVPFCIAKSRQTTSLVKQNVTLALSSILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNQPSWSWKQDFHNLIHDTRSKLHTTPETSSGAIQTAPL | 826 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 33624983 | 33636115 | - | Maker00001917 | Lcy8g0947 | 639839 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g0947 | 826 | NCBIfam | heavy metal translocating P-type ATPase | 189 | 786 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
Lcy8g0947 | 826 | PRINTS | P-type cation-transporting ATPase superfamily signature | 607 | 618 | - | - | |
Lcy8g0947 | 826 | PRINTS | P-type cation-transporting ATPase superfamily signature | 630 | 640 | - | - | |
Lcy8g0947 | 826 | PRINTS | P-type cation-transporting ATPase superfamily signature | 455 | 469 | - | - | |
Lcy8g0947 | 826 | PRINTS | P-type cation-transporting ATPase superfamily signature | 684 | 703 | - | - | |
Lcy8g0947 | 826 | PRINTS | P-type cation-transporting ATPase superfamily signature | 708 | 720 | - | - | |
Lcy8g0947 | 826 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 191 | 768 | IPR023298 | - | |
Lcy8g0947 | 826 | Gene3D | - | 466 | 615 | IPR023299 | GO:0000166(InterPro) | |
Lcy8g0947 | 826 | PANTHER | PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 | 66 | 814 | IPR051949 | - | |
Lcy8g0947 | 826 | Pfam | E1-E2 ATPase | 262 | 435 | - | - | |
Lcy8g0947 | 826 | SFLD | C1.7: P-type atpase like | 437 | 737 | - | - | |
Lcy8g0947 | 826 | NCBIfam | HAD-IC family P-type ATPase | 264 | 476 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy8g0947 | 826 | NCBIfam | HAD-IC family P-type ATPase | 590 | 764 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy8g0947 | 826 | SUPERFAMILY | HAD-like | 453 | 784 | IPR036412 | - | |
Lcy8g0947 | 826 | Gene3D | - | 228 | 353 | - | - | |
Lcy8g0947 | 826 | Gene3D | - | 448 | 735 | IPR023214 | - | |
Lcy8g0947 | 826 | SUPERFAMILY | Calcium ATPase, transduction domain A | 263 | 348 | IPR008250 | - | |
Lcy8g0947 | 826 | SFLD | p-type atpase | 437 | 737 | IPR044492 | - | |
Lcy8g0947 | 826 | Pfam | haloacid dehalogenase-like hydrolase | 453 | 697 | - | - | |
Lcy8g0947 | 826 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 457 | 463 | IPR018303 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0304 | Lcy-Chr2:2456692 | Lcy8g0947 | Lcy-Chr8:33624983 | 3.35E-56 | dispersed | |
Lcy4g1622 | Lcy-Chr4:41100998 | Lcy8g0947 | Lcy-Chr8:33624983 | 9.09E-54 | dispersed | |
Lcy8g0947 | Lcy-Chr8:33624983 | Lcy9g1938 | Lcy-Chr9:44387646 | 6.69E-30 | dispersed | |
Lcy8g0947 | Lcy-Chr8:33624983 | Lcy13g1039 | Lcy-Chr13:22711472 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g0947 | K01534 | - | csv:101221102 | 1434.47 |