Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g0947 ATGCCGAATATGGACGCTCTCTTTGTCCCCATCACCTTCTCCGAGCCTCCACACTCTTTATTAACCCGCACCACCAACGCCGGAGCTCAATTGAGGGTTGGACCTGTTTCCCGCTTCTCGCTGCGTTCTTCTGTAATTCAGCTCAAGCGCTTTCCTATTCGCTGTAAGAAGCTTTCCTATTCTCGCTTTGGTCGCTTTCGTTGCGCCGCCGAGGCCTCCAATCACCGGCACGGTCACCATCACGGCCATCATCACCACCACCATGGCTGCCAGCACCATTGCGGTGGTGACGGTGATGGAGTAGAGCTGACTGGAGCCCAGAAGGCGTTTGTTCGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTATTTGAGGGAGCATCTACACTTGTGTTGCGGTTCTGCTGCTTTGTTTATCACTGCCGCTGCTACTCCTTATTTGGTGCCTAAACCTGCTGTGAAGCCTCTACAGAATGTTTTCATTGCTGTTGCTTTCCCTTTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATTAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCCCTTGCAGCCTTTGCATCAATATTTATGGGGAACCCGGTAGAAGGAGGACTACTTCTTGTGATGTTTAATCTGGCGCATATTGCTGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAAGGAGTTGAAGGAAAGTCATCCAGATTTTGCTCTTGTTCTGGATGTGAATGATGATAACCTTCCTGATACTTCAGATCTGGAGCATAGAAGGGTGCCAGTGCGTGATGTTGAAGTGGGCTCATATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAAGTTTATCGAGGTTGTGCTACAATCACTGTTGAGCACTTGACAGGAGAAGTCAAACCGTTGCAAATAAAGGTTGGGGAAAGAGTTCCTGGTGGAGCAAGAAACTTGGACGGTAGGATCATAGTGAAGGCTACAAAAACATGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAGCTACAGAGGTGGCTCGATGAATTTGGTGAGAATTACAGCAAGGTTGTTGTAGTTTTATCTGTAGCTGTTGCCCTCATTGGACCATTATTGTTCAAGTGGCCATTCATATGTACACCAGGTTTCAGAGGATCAGTTTATAGAGCACTTGGGCTTATGGTAGCCGCATCACCATGTGCACTGGCTGCTGCTCCATTGGCATACGCTATTGCAATAAGTTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACATGTACTTGATGCTATGGCTTCTTGTCACACTGTTGCATTTGATAAAACCGGGACATTGACTACAGGAGGACTTGTATTTAAAGCTATAGAACCCATTTATGGGCATACGATTGGAGGAGATAAATCACATTTAGCTTCCTGTTGCATACCCAGCTGTGAAAAAGAAGCCCTTGCAGTGGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCCGTAGTAGATCATAGTGTGGGGAAAGACCTTCCTTCTATTTCTGTTGAAAGTTTTGAATATTTCCCTGGAAGAGGTCTCATTGCAACTCTGCATGGCATTAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCCCTTGGTTCTGTGGATTTCATCACTTCCTTTTGCAAATCTGAAAATGAATCAAGGAAGATCAAGGAAGCTGTTAGAGGGTCATCATATGGCAGTGAATTTGTTCATGCTGCTCTTTCAGTTGATCAAAAGGTAACACTGATTCACCTTGAGGATCAGCCTCGACCTGGAGTCTTAGATGCAATAGCTGAACTACAAGATCAGGCAAAACTCCGTGTTATGATGTTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCGAATGCTGTGGGCATAAATGAAGTTTACTACAGTCTTAAGCCTGAGGACAAACTTGCTCATGTGAAGGAAATATCAAGGGAGATGGGGGGTGGTCTGATCATGGTAGGCGAAGGTATAAATGATGCACCTGCACTGGCTGCAGCTACTGTGGGAATAGTTCTTGCCCATCGTGCAAGCGCTACTGCAACAGCCGTTGCAGATGTCCTGCTTCTTCAGGACAGTATTTCTGGTGTACCATTCTGTATTGCCAAATCTCGTCAGACGACTTCATTGGTCAAGCAAAATGTGACCCTTGCCTTGTCATCTATCCTTCTAGCCTCGCTCCCATCTGTTTTGGGGTTCCTTCCCTTGTGGCTAACGGTCCTTCTACACGAGGGTGGCACTCTCCTGGTTTGCCTGAACTCCATACGTGCTCTAAATCAGCCCTCATGGTCATGGAAGCAAGATTTTCACAATCTGATACACGACACCAGATCGAAACTGCACACGACACCAGAAACTAGCTCTGGTGCCATTCAAACTGCACCTTTGTAG 2481 46.23 MPNMDALFVPITFSEPPHSLLTRTTNAGAQLRVGPVSRFSLRSSVIQLKRFPIRCKKLSYSRFGRFRCAAEASNHRHGHHHGHHHHHHGCQHHCGGDGDGVELTGAQKAFVRFAEAIRWTDLANYLREHLHLCCGSAALFITAAATPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPVEGGLLLVMFNLAHIAEEYFTKQSMIDVKELKESHPDFALVLDVNDDNLPDTSDLEHRRVPVRDVEVGSYILVGAGESVPVDCEVYRGCATITVEHLTGEVKPLQIKVGERVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSVYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHTIGGDKSHLASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVESFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKEAVRGSSYGSEFVHAALSVDQKVTLIHLEDQPRPGVLDAIAELQDQAKLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGVPFCIAKSRQTTSLVKQNVTLALSSILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNQPSWSWKQDFHNLIHDTRSKLHTTPETSSGAIQTAPL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33624983 33636115 - Maker00001917 Lcy8g0947 639839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g0947 826 NCBIfam heavy metal translocating P-type ATPase 189 786 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Lcy8g0947 826 PRINTS P-type cation-transporting ATPase superfamily signature 607 618 - -
Lcy8g0947 826 PRINTS P-type cation-transporting ATPase superfamily signature 630 640 - -
Lcy8g0947 826 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Lcy8g0947 826 PRINTS P-type cation-transporting ATPase superfamily signature 684 703 - -
Lcy8g0947 826 PRINTS P-type cation-transporting ATPase superfamily signature 708 720 - -
Lcy8g0947 826 SUPERFAMILY Calcium ATPase, transmembrane domain M 191 768 IPR023298 -
Lcy8g0947 826 Gene3D - 466 615 IPR023299 GO:0000166(InterPro)
Lcy8g0947 826 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 66 814 IPR051949 -
Lcy8g0947 826 Pfam E1-E2 ATPase 262 435 - -
Lcy8g0947 826 SFLD C1.7: P-type atpase like 437 737 - -
Lcy8g0947 826 NCBIfam HAD-IC family P-type ATPase 264 476 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy8g0947 826 NCBIfam HAD-IC family P-type ATPase 590 764 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy8g0947 826 SUPERFAMILY HAD-like 453 784 IPR036412 -
Lcy8g0947 826 Gene3D - 228 353 - -
Lcy8g0947 826 Gene3D - 448 735 IPR023214 -
Lcy8g0947 826 SUPERFAMILY Calcium ATPase, transduction domain A 263 348 IPR008250 -
Lcy8g0947 826 SFLD p-type atpase 437 737 IPR044492 -
Lcy8g0947 826 Pfam haloacid dehalogenase-like hydrolase 453 697 - -
Lcy8g0947 826 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0304 Lcy-Chr2:2456692 Lcy8g0947 Lcy-Chr8:33624983 3.35E-56 dispersed
Lcy4g1622 Lcy-Chr4:41100998 Lcy8g0947 Lcy-Chr8:33624983 9.09E-54 dispersed
Lcy8g0947 Lcy-Chr8:33624983 Lcy9g1938 Lcy-Chr9:44387646 6.69E-30 dispersed
Lcy8g0947 Lcy-Chr8:33624983 Lcy13g1039 Lcy-Chr13:22711472 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g0947 K01534 - csv:101221102 1434.47