Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g0972 | ATGGAGAGCTGGTTCATCATCCTCGTCTCCCTCTGCGTCTGCTCTCTTCTCAGCTCCATTTTTACCCAATTCCGAAGCTCCACCAAGCTTCCACCAGGCCCTCCTTCAATTCCCATCGTCACCACGTTCCAATGGATCCGCAAATCCCCACTCCAAATCCAGTCTCTGCTACGCAGTTTCGTCGCCGAGTACGGCCCCATCCTCACCCTCCGCATCGGCCCCCGCCCCATCATCTTCATCGCCGACCACACCATTGCCCACAAGGTCCTCGTCCAAAACGGCGCTGTCTTCGCCGACCGTCCACCGGCTCCTCCGTTGAGGAAGGTCTTCACCAGCAACCAGCACAGCATCAGCTCTGCCTCTTACGGCCCACTCTGGCGCCTCCTCCGCCGAAATCTCACTTCCCAAATCCTCCATCCCTCTCGGGTCAGGTCCTACGCTCGTGCTCGCAAATGGGTTTTGGATATTCTTCTCACTCGCCTTCCGTCTCTGTCTGAATCTGGAAACCCCGTCCCTGTCGTCGATCATTTTCGGTTCGCCATGTTCTGTTTGTTGGTGTTGATGTGCTTTGGAGATAAGCTTGACGAGTCCCAGATCCGAGAAATCGAGAACGTGGAGCGGGCGATGATGTTGAGTTTTGGGCGTTTCAACGTTCTAAATTTCTGGCCCAAAGTCACCAAGTTTTTGCTCCGGAAACGCTGGGAGGCGTTTCTCCGAATAAGAAGGAACCAAGAGAAAGTCCTAATTCCTTTGATCGAAGCAAGAAGGAAGGCCAAACAAAACAGAGCAAACAGAGGCCAAACTGAAAAAGAAGAAGAAGAAGAAGAATTCGTGGTGTCATATGTGGATTCGCTGCTCGATTTGGAGCTCCCAGAAGAGAAGAGAAAGCTTAACGATGAAGAACTTGTCACTTTATGCTCCGAATTTCTCAACGGCGGCACGGATACGACCACCACGGCCTTGCAGTGGATAATGGCGAATTTAGTGAAATACCCAGAAATTCAAAACAAGCTTTATGCAGAGATCAAAGGAGTAATGAGGGATGGATCGAGGGAGGAGGTGAAGGAAGAAGACTTGGGGAAACTTCCATATCTGAAAGCTGTGGTTTTAGAAGGATTGCGAAGACACCCGCCGGCGAATTTTGTGCTACCACACGCGGTGAAAGAAGATACAGAGTTGGGAAATTACATTATACCAAAGAATGGAGGCATAAATTTCATGGTGGCGGAGATGGGTCGGGATCCAAAAGTGTGGGAAGATCCGATGGCGTTTAAGCCGGAGAGGTTCATGAAGGGCGGCAATTGCAAAGAAGAAGAAGTGGCGTTTGATATAACAGGGAACAAAGAAATAAAGATGATGCCGTTCGGAGCAGGGAGAAGGGTATGTCCTGGATTTGGTCTGGCAATTCTTCATTTGGAGTATTTCGTTGCCAATTTGGTTTGGAGGTTGGAATGGAAGGCCTTAGATGGAGACGAAATTGATCTGTCGGAGAAGGTAGAACTCACCATTGTGATGAAAAATCCTCTCAAAGCGAACATACAGTCAAGGTTTCAGATTCCCTAG | 1563 | 49.65 | MESWFIILVSLCVCSLLSSIFTQFRSSTKLPPGPPSIPIVTTFQWIRKSPLQIQSLLRSFVAEYGPILTLRIGPRPIIFIADHTIAHKVLVQNGAVFADRPPAPPLRKVFTSNQHSISSASYGPLWRLLRRNLTSQILHPSRVRSYARARKWVLDILLTRLPSLSESGNPVPVVDHFRFAMFCLLVLMCFGDKLDESQIREIENVERAMMLSFGRFNVLNFWPKVTKFLLRKRWEAFLRIRRNQEKVLIPLIEARRKAKQNRANRGQTEKEEEEEEFVVSYVDSLLDLELPEEKRKLNDEELVTLCSEFLNGGTDTTTTALQWIMANLVKYPEIQNKLYAEIKGVMRDGSREEVKEEDLGKLPYLKAVVLEGLRRHPPANFVLPHAVKEDTELGNYIIPKNGGINFMVAEMGRDPKVWEDPMAFKPERFMKGGNCKEEEVAFDITGNKEIKMMPFGAGRRVCPGFGLAILHLEYFVANLVWRLEWKALDGDEIDLSEKVELTIVMKNPLKANIQSRFQIP | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 34308190 | 34309752 | + | Maker00001334 | Lcy8g0972 | 639864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g0972 | 520 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 455 | 464 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy8g0972 | 520 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 10 | 514 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Lcy8g0972 | 520 | PRINTS | P450 superfamily signature | 312 | 329 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | P450 superfamily signature | 453 | 462 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | P450 superfamily signature | 462 | 473 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | P450 superfamily signature | 367 | 378 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | SUPERFAMILY | Cytochrome P450 | 31 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | FunFam | Cytochrome P450 family protein | 24 | 518 | - | - | |
| Lcy8g0972 | 520 | Gene3D | Cytochrome P450 | 24 | 518 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | CDD | CYP77_89 | 63 | 510 | - | - | |
| Lcy8g0972 | 520 | Pfam | Cytochrome P450 | 31 | 507 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | Coils | Coil | 256 | 276 | - | - | |
| Lcy8g0972 | 520 | PRINTS | E-class P450 group I signature | 85 | 106 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | E-class P450 group I signature | 180 | 198 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | E-class P450 group I signature | 301 | 318 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | E-class P450 group I signature | 366 | 384 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | E-class P450 group I signature | 462 | 485 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | E-class P450 group I signature | 452 | 462 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | E-class P450 group I signature | 321 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy8g0972 | 520 | PRINTS | E-class P450 group I signature | 407 | 431 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy8g0934 | Lcy-Chr8:33242475 | Lcy8g0972 | Lcy-Chr8:34308190 | 2.25E-149 | dispersed | |
| Lcy8g0972 | Lcy-Chr8:34308190 | Lcy8g0975 | Lcy-Chr8:34377657 | 8.12E-251 | dispersed | |
| Lcy8g0971 | Lcy-Chr8:34286358 | Lcy8g0972 | Lcy-Chr8:34308190 | 0 | tandem | |
| Lcy8g0972 | Lcy-Chr8:34308190 | Lcy8g0973 | Lcy-Chr8:34339365 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy8g0972 | K24184 | - | csv:101220777 | 825.469 |