Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1013 ATGGCTACTTCCTTGTATGCCTTTTCAATGTTAAGTCGTCTCTTTCTCCTTCTTATTCTCTATTTTCCTCTCTTCATTGACTCGGTTTTTTTCAAACTTGATCCAATCGAGCCCAATGAAAATCGTTTACTTTATCAAGGTGATGCAGTTCCTTCTAATGGAGGAGTTCTATTCAGCGACCCTGCGTATGCTTGTCATCTTGGTCGAGCTATTTACAGAGATACTGTGCCAATTTGGGACTCTGAAACAGGAAAAGTCACCGATTTCACAACCCATTTCTCCTTCACTATTGATACACAACAAGCTTTAAATTATGGCCATGGGGTTGTTTTTTTCTTGGGTCCCGCTGGGTTTCAAATCCCTCCAAACTCAGCTGGTGGGTTTCTTGGCCTTTTCAACAAGACGTACAATGATTCACCCAAAAACCAAATCGTTCATGTTGAGTTTGATTCTTACTCTAATGAATGGGATCCTCCATTTCAACATGTAGGTATCAACATTAACTCGCTTTCTTCCTCTAATTTCACCAGTTGGAACGATAGCTTACACAGCCTGGACACTGTTGATGTGTTTATCTCCTACGATTCGACCACCAAAAACTTGGGCGTCTCATGGAAACATCAGAAGACATCGACTTCTTTTGAAAATACAACCCTGAGCTACCAGGTTGATCTTATGAAGATTCTTCCTCAATGGGCTACGGTAGGATTTTCCGCTGCAACAGGTGCATATTCAGAGCGACATTTGCTATTTTCTTGGGAATTCAACTCGAGCCTGGAAATGAAACAACCAGGTGAAAATAATAATGGGAAAAAAGTTGGTGAAATTGTGGGTGTCACAGTTTCATTGGGAGTTTTTATGATCACCATGGCAATAATAGCATACGTAGTATTTTGGAGATTGAAGCAAAAGAAAAGAAAAACAGGACCAGAAAACCTTGAGGAAGTAAACTTGACATCCATTAACGATGATTTGGAAAGAGGGGTCGGACCGAGGAGGTTTTCTCACAAGCTTCTTGCCATGGCCACCAACAACTTCTCAGATGAGAGGAAGGTTGGCCAAGGAGGATTTGGTGCAGTGTATAGAGGGCACATACCAAATATAGATTTGACTGTAGCTGTGAAGAAAATCTCAAGGAGTTCTAAACAAGGAAGAAAAGAGTACATAACTGAGGTGAAGATCATTAGTAGGCTTCGCCATCGGAATTTGGTGCAACTCATAGGTTGGTGCCATGAGAAGGGCGAATTCTTGTTAGTTTATGAATTCATGCCTAATGGTAGTCTTGATTCTCATCTCTTTGGCAAGAGAAACCCTCTTGCATGGGCTCTGAGATATAAGATTGCTTTAGGTTTAGCCTCTGCATTGCTATATCTCCACGAAGAGTGGGAACAATGCGTGGTTCATAGGGATATTAAATCTAGCAATGTCATGTTAGATTCAAACTTCAACGTCAAGCTTGGAGATTTTGGGCTGGCTCGATTGATGGACCATGAATTGGGTGCTCAAACAACTGGATTGGTAGGAACTTTGGGCTACTTAGCTCCTGAATACATAAGCACAGGCAGGGCTAGTAAAGAATCTGACGTGTTTAGCTTTGGAGTGGTTGCTTTAGAGATTGCAACTGGAAGAATGTCAAGAAACTCCATGGAAGAGGAATCTCATAAGGGTTTGGTGGAGTGGGTTTGGGATCTTTATGGAAGTGGACAGTTGCTTGAGGGTGTGGATGAGAAATTGCATTCAGATTTTGACAAAAAACAGGTGGAATGTTTGATGGTTGTTGGACTATGGAGTGCTTATCCGGACCCTAATCTTCGACCTTCGATAAAACAAGCAATTCAAGTTCTTAACTTTGAGACAACGACGCCAAATCTTCCAAGTAAAATGCCTGTTCCTACGTATCATGCTCCTCCCACATCGATGAGCTCAAATGAACCTTCCATTACCGTAAGTCTTGACATGGGTCGTTGA 1968 41.77 MATSLYAFSMLSRLFLLLILYFPLFIDSVFFKLDPIEPNENRLLYQGDAVPSNGGVLFSDPAYACHLGRAIYRDTVPIWDSETGKVTDFTTHFSFTIDTQQALNYGHGVVFFLGPAGFQIPPNSAGGFLGLFNKTYNDSPKNQIVHVEFDSYSNEWDPPFQHVGININSLSSSNFTSWNDSLHSLDTVDVFISYDSTTKNLGVSWKHQKTSTSFENTTLSYQVDLMKILPQWATVGFSAATGAYSERHLLFSWEFNSSLEMKQPGENNNGKKVGEIVGVTVSLGVFMITMAIIAYVVFWRLKQKKRKTGPENLEEVNLTSINDDLERGVGPRRFSHKLLAMATNNFSDERKVGQGGFGAVYRGHIPNIDLTVAVKKISRSSKQGRKEYITEVKIISRLRHRNLVQLIGWCHEKGEFLLVYEFMPNGSLDSHLFGKRNPLAWALRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIATGRMSRNSMEEESHKGLVEWVWDLYGSGQLLEGVDEKLHSDFDKKQVECLMVVGLWSAYPDPNLRPSIKQAIQVLNFETTTPNLPSKMPVPTYHAPPTSMSSNEPSITVSLDMGR 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35248209 35250176 + Maker00001390 Lcy8g1013 639905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1013 655 Gene3D - 26 272 - -
Lcy8g1013 655 Pfam Legume lectin domain 39 269 IPR001220 GO:0030246(InterPro)
Lcy8g1013 655 CDD lectin_legume_LecRK_Arcelin_ConA 38 259 IPR001220 GO:0030246(InterPro)
Lcy8g1013 655 MobiDBLite consensus disorder prediction 633 655 - -
Lcy8g1013 655 MobiDBLite consensus disorder prediction 635 649 - -
Lcy8g1013 655 CDD STKc_IRAK 352 616 - -
Lcy8g1013 655 SMART serkin_6 346 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1013 655 PANTHER - 60 625 IPR050528 GO:0005886(PANTHER)
Lcy8g1013 655 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Lcy8g1013 655 ProSitePatterns Protein kinases ATP-binding region signature. 352 376 IPR017441 GO:0005524(InterPro)
Lcy8g1013 655 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 261 IPR013320 -
Lcy8g1013 655 FunFam L-type lectin-domain containing receptor kinase IX.1 27 268 - -
Lcy8g1013 655 FunFam Lectin-domain containing receptor kinase A4.3 423 635 - -
Lcy8g1013 655 Pfam Protein kinase domain 347 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1013 655 SUPERFAMILY Protein kinase-like (PK-like) 330 638 IPR011009 -
Lcy8g1013 655 FunFam L-type lectin-domain containing receptor kinase IX.1 331 422 - -
Lcy8g1013 655 ProSiteProfiles Protein kinase domain profile. 346 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1013 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1013 655 Gene3D Transferase(Phosphotransferase) domain 1 423 636 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1013 Lcy-Chr8:35248209 Lcy8g1018 Lcy-Chr8:35418596 0 dispersed
Lcy8g1009 Lcy-Chr8:35159353 Lcy8g1013 Lcy-Chr8:35248209 7.21E-304 proximal
Lcy8g1013 Lcy-Chr8:35248209 Lcy8g1014 Lcy-Chr8:35298430 1.03E-91 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66108 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1013 - - - 0.0