Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1056 ATGCTTCCCAACACTCCCTTTATTCTCTCTTCTATCTTTCTAATTCTTCCCTTCTTCTTCATTTCATCCCTATGTGCTCCTAATTATAATTCTAACTATCAAAATGCTTACTCTGAACTCAGATATGATTTTTACGACGAGTCGTGCCCCCGTTTGCCAATGATAATTCGATATCGTGTTTGGGGTGCAGTACAAAACGACTCGAGAATTGCTGCATCATTGTTGCGATTGCAATTCCATGATTGTATTGTAGACGGATGCGATGCGTCGGTGTTGCTTGACGATACAAAGGACATGAAAGGTGAGAAAAAAGCACCTGGCAATGTGAACTCACTTAGAGGGTTTGAAGTGATTGATGCCATAAAAGCAGATGTAGAAACATATTGCCCAGAAACAGTTTCATGTGTTGATATATTGGGTCTTGCCGCTAGAGAAGCTGTGTATCTGGTCGGAGGACCATCCTGGAACCTCCCACTAGGACGTAGAGATGGCTTAACCGCAAACATAAAATCAGTGTTGGAACAGCTGCCATCCCCCAAGGCATCTCTAGAGAACAACACAGCCAAGTTCATCTCAAAGGGCCTCGACTTAAAGGACCTCGTCGTGCTTTCAGGCGCCCACACCATCGGGTTCGCCCGCTGCGTGACATTCAAGGGCCGCCTCTTCAACTACAAGGGCTCCGGCCAGCCCGACCCAGACATCAACGCGGCCATGCTGTCGGAGCTTCGGACCACGTGCCCCAACAGAAACGACGGCACCAACGCCAACTTGGCCCCGCTGGATGTGGCCAGTTTCGACAGGTTTGACAACGAGTACTACACCAATCTGATTGGCGGTGTTGGGCTTTTGGAGTCGGACCAGGGTCTGATGGCCGACCCCCGGACGGCTTCCTTGGTCAGAGATTACAGTTTCGATACGAATTTGTTCTTCGATGACTTTGCGGAGTCCATGACGAGGATGAGCTTGGTTGGCGTTCTCACTGGCCGCAATGGCCAGATCCGAAAGGAATGTCACGTTGTTAATGTCGATGATGGCTATTGA 1041 49.09 MLPNTPFILSSIFLILPFFFISSLCAPNYNSNYQNAYSELRYDFYDESCPRLPMIIRYRVWGAVQNDSRIAASLLRLQFHDCIVDGCDASVLLDDTKDMKGEKKAPGNVNSLRGFEVIDAIKADVETYCPETVSCVDILGLAAREAVYLVGGPSWNLPLGRRDGLTANIKSVLEQLPSPKASLENNTAKFISKGLDLKDLVVLSGAHTIGFARCVTFKGRLFNYKGSGQPDPDINAAMLSELRTTCPNRNDGTNANLAPLDVASFDRFDNEYYTNLIGGVGLLESDQGLMADPRTASLVRDYSFDTNLFFDDFAESMTRMSLVGVLTGRNGQIRKECHVVNVDDGY 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36318939 36321021 - Maker00000755 Lcy8g1056 639948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1056 346 CDD secretory_peroxidase 39 340 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy8g1056 346 SUPERFAMILY Heme-dependent peroxidases 40 341 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 ProSitePatterns Peroxidases proximal heme-ligand signature. 199 209 IPR019793 -
Lcy8g1056 346 Pfam Peroxidase 57 303 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 ProSiteProfiles Plant heme peroxidase family profile. 39 341 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 Gene3D Peroxidase, domain 2 177 320 - -
Lcy8g1056 346 FunFam Peroxidase 177 320 - -
Lcy8g1056 346 FunFam Peroxidase 43 190 - -
Lcy8g1056 346 Gene3D - 43 341 - -
Lcy8g1056 346 PRINTS Plant peroxidase signature 132 142 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Plant peroxidase signature 275 292 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Plant peroxidase signature 49 68 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Plant peroxidase signature 198 210 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Plant peroxidase signature 73 93 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Plant peroxidase signature 315 328 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Plant peroxidase signature 151 166 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Plant peroxidase signature 113 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Plant peroxidase signature 259 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Haem peroxidase superfamily signature 133 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Haem peroxidase superfamily signature 151 163 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Haem peroxidase superfamily signature 71 85 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PRINTS Haem peroxidase superfamily signature 261 276 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 PANTHER PEROXIDASE 72-RELATED 22 340 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy8g1056 346 ProSitePatterns Peroxidases active site signature. 71 82 IPR019794 GO:0004601(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0149 Lcy-Chr7:1353457 Lcy8g1056 Lcy-Chr8:36318939 3.26E-71 dispersed
Lcy8g1056 Lcy-Chr8:36318939 Lcy8g2142 Lcy-Chr8:47576073 1.57E-103 dispersed
Lcy1g1007 Lcy-Chr1:8994019 Lcy8g1056 Lcy-Chr8:36318939 6.20E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1056 K00430 - csv:101209504 554.673