Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1070 | ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTTATTTCCACAAGCTTGTTCTCTCCTCCACTATCCAAGCTAGGAAATTGCCCAGTTTAGTCGTTGGGACATTGACAGAAGCAAGCAAACTTCATATTCCTTCTGTTGTATTGCTAATTGCTATTCTCACAGTACATCATGTTAGCTTCTTTTCTATATTATCAATCATTTACGTGACCCCATTACTGCTCAATATTTTGCAGAGAATCCCTGAGACTTTTGTCAGGATGATCAGGGATGAGCTTTCTGCAGTTGCAACACTTACTGTTCCTGACGGTCATGTTTGGCGTGTGGGGTTGAGGAAAACCGATAATAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTCGAGCATTATGCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCTCTCGGTAGTAATCAAAGGAATAATTACAGCATTCAAAACAGAGTCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCTATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTACGAAACAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACATTGCAAGCCGAATACTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTAGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGGTGGACACAGACCTAAAAAAAGTGGAGGCAAAAAGCGGAAAATTGATTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGGAAGAGAACTGTGACTGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAGGCTTTCGAGCCTGCTAATCCTTTCTGCAGGGTTGTCTTGCGACCATCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGAGTTTCAGGATTCATCAAACTTCAGACACCTGATGGTAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCCAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTCAGGATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGATGCTGGACGAATGGTAAACCCGAATCCTCCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCAAATTAAGCTGATCAGAAATTAA | 1389 | 40.75 | MTDFSAFRTGGFKRKMPRPYFHKLVLSSTIQARKLPSLVVGTLTEASKLHIPSVVLLIAILTVHHVSFFSILSIIYVTPLLLNILQRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKTDNKFWFEDGWHGFLEHYAIRVGYLLVFRYEGNSAFCVFIFNLNTSEINYQSAALGSNQRNNYSIQNRVFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDGGHRPKKSGGKKRKIDSSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEDAGRMVNPNPPSMMNPPPLRSVSQIKLIRN | 462 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 36634249 | 36638491 | + | Maker00000410 | Lcy8g1070 | 639962 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1070 | 462 | Gene3D | - | 313 | 433 | IPR015300 | - | |
Lcy8g1070 | 462 | CDD | B3_DNA | 56 | 162 | IPR003340 | GO:0003677(InterPro) | |
Lcy8g1070 | 462 | ProSiteProfiles | B3 DNA-binding domain profile. | 71 | 164 | IPR003340 | GO:0003677(InterPro) | |
Lcy8g1070 | 462 | SMART | B3_2 | 72 | 164 | IPR003340 | GO:0003677(InterPro) | |
Lcy8g1070 | 462 | SMART | B3_2 | 336 | 431 | IPR003340 | GO:0003677(InterPro) | |
Lcy8g1070 | 462 | Pfam | B3 DNA binding domain | 338 | 429 | IPR003340 | GO:0003677(InterPro) | |
Lcy8g1070 | 462 | Pfam | B3 DNA binding domain | 87 | 162 | IPR003340 | GO:0003677(InterPro) | |
Lcy8g1070 | 462 | PANTHER | B3 DOMAIN-CONTAINING | 66 | 416 | IPR050655 | - | |
Lcy8g1070 | 462 | Gene3D | - | 64 | 165 | IPR015300 | - | |
Lcy8g1070 | 462 | MobiDBLite | consensus disorder prediction | 278 | 294 | - | - | |
Lcy8g1070 | 462 | SUPERFAMILY | DNA-binding pseudobarrel domain | 331 | 432 | IPR015300 | - | |
Lcy8g1070 | 462 | MobiDBLite | consensus disorder prediction | 261 | 294 | - | - | |
Lcy8g1070 | 462 | CDD | B3_DNA | 334 | 429 | IPR003340 | GO:0003677(InterPro) | |
Lcy8g1070 | 462 | SUPERFAMILY | DNA-binding pseudobarrel domain | 78 | 164 | IPR015300 | - | |
Lcy8g1070 | 462 | ProSiteProfiles | B3 DNA-binding domain profile. | 336 | 431 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g0332 | Lcy-Chr6:3108908 | Lcy8g1070 | Lcy-Chr8:36634249 | 5.57E-22 | dispersed | |
Lcy8g0519 | Lcy-Chr8:17073108 | Lcy8g1070 | Lcy-Chr8:36634249 | 7.87E-18 | dispersed | |
Lcy8g1070 | Lcy-Chr8:36634249 | Lcy8g1071 | Lcy-Chr8:36647044 | 4.52E-34 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20499 | None | None | None | None | Lcy | TF |
Pathway information
