Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1070 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTTATTTCCACAAGCTTGTTCTCTCCTCCACTATCCAAGCTAGGAAATTGCCCAGTTTAGTCGTTGGGACATTGACAGAAGCAAGCAAACTTCATATTCCTTCTGTTGTATTGCTAATTGCTATTCTCACAGTACATCATGTTAGCTTCTTTTCTATATTATCAATCATTTACGTGACCCCATTACTGCTCAATATTTTGCAGAGAATCCCTGAGACTTTTGTCAGGATGATCAGGGATGAGCTTTCTGCAGTTGCAACACTTACTGTTCCTGACGGTCATGTTTGGCGTGTGGGGTTGAGGAAAACCGATAATAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTCGAGCATTATGCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCTCTCGGTAGTAATCAAAGGAATAATTACAGCATTCAAAACAGAGTCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCTATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTACGAAACAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACATTGCAAGCCGAATACTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTAGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGGTGGACACAGACCTAAAAAAAGTGGAGGCAAAAAGCGGAAAATTGATTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGGAAGAGAACTGTGACTGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAGGCTTTCGAGCCTGCTAATCCTTTCTGCAGGGTTGTCTTGCGACCATCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGAGTTTCAGGATTCATCAAACTTCAGACACCTGATGGTAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCCAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTCAGGATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGATGCTGGACGAATGGTAAACCCGAATCCTCCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCAAATTAAGCTGATCAGAAATTAA 1389 40.75 MTDFSAFRTGGFKRKMPRPYFHKLVLSSTIQARKLPSLVVGTLTEASKLHIPSVVLLIAILTVHHVSFFSILSIIYVTPLLLNILQRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKTDNKFWFEDGWHGFLEHYAIRVGYLLVFRYEGNSAFCVFIFNLNTSEINYQSAALGSNQRNNYSIQNRVFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDGGHRPKKSGGKKRKIDSSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEDAGRMVNPNPPSMMNPPPLRSVSQIKLIRN 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36634249 36638491 + Maker00000410 Lcy8g1070 639962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1070 462 Gene3D - 313 433 IPR015300 -
Lcy8g1070 462 CDD B3_DNA 56 162 IPR003340 GO:0003677(InterPro)
Lcy8g1070 462 ProSiteProfiles B3 DNA-binding domain profile. 71 164 IPR003340 GO:0003677(InterPro)
Lcy8g1070 462 SMART B3_2 72 164 IPR003340 GO:0003677(InterPro)
Lcy8g1070 462 SMART B3_2 336 431 IPR003340 GO:0003677(InterPro)
Lcy8g1070 462 Pfam B3 DNA binding domain 338 429 IPR003340 GO:0003677(InterPro)
Lcy8g1070 462 Pfam B3 DNA binding domain 87 162 IPR003340 GO:0003677(InterPro)
Lcy8g1070 462 PANTHER B3 DOMAIN-CONTAINING 66 416 IPR050655 -
Lcy8g1070 462 Gene3D - 64 165 IPR015300 -
Lcy8g1070 462 MobiDBLite consensus disorder prediction 278 294 - -
Lcy8g1070 462 SUPERFAMILY DNA-binding pseudobarrel domain 331 432 IPR015300 -
Lcy8g1070 462 MobiDBLite consensus disorder prediction 261 294 - -
Lcy8g1070 462 CDD B3_DNA 334 429 IPR003340 GO:0003677(InterPro)
Lcy8g1070 462 SUPERFAMILY DNA-binding pseudobarrel domain 78 164 IPR015300 -
Lcy8g1070 462 ProSiteProfiles B3 DNA-binding domain profile. 336 431 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0332 Lcy-Chr6:3108908 Lcy8g1070 Lcy-Chr8:36634249 5.57E-22 dispersed
Lcy8g0519 Lcy-Chr8:17073108 Lcy8g1070 Lcy-Chr8:36634249 7.87E-18 dispersed
Lcy8g1070 Lcy-Chr8:36634249 Lcy8g1071 Lcy-Chr8:36647044 4.52E-34 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20499 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1070 - - - 0.0