Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1080 ATGCCGACCTCCCCTTCCCCTTCCCCTTCCCCATCCACCTCTTCCTCCTCCGCCGCCGCCGCCAATTTCCCTCCACCATCCTCCTTACAGCCTGCAAAGCTCCCCGTCGACTTCAGCCCTCCTCTAATCGCCATGGTCGTCGTCATCGCCACTGCCTTTCTCATTGTAACTTACTCTCGCCTCATCTCCCGCCACCTCATCCCTCCGATCCTCCACCTTCTCCGCCGCCACCGCCGCCGATGGAGGCGGTGGCGGCGACGGCGACGTCGAGCTCGATCTTACCTTCCGTCGTCATCCGGCGGCGACCTGGATTCTCTCCCTTACGATTCGCCTTTCTTCGAGCCTACCGATGCCTTCCACGTGTTCTCTCCGTACGGCCTCGACGAATCCGTCATCAAGACGATTCCGCTCTCGGTCTACACTGCCAAGAGTCGCGACCGTGAGTGCGCCGTTTGTCTTCTGGAGTTCGAAGACGATGATTACGTCCGTACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCGCTCTGTCGCGCGGTGGTTTTCCGACCGGAGTCTCCGTTCACGCCGGTCATGGCGGCCAGAATCCGGCCGAGCCTCGACGATACGATCTTACGGAGCATCGTATTGGAGCCGCTCGCGGAAGGATCAAATCAACGGCAGAGACTTCTTGCTGAAGCGATCGTATTCATTCGGATTCGAACGGAGCCTAGCGTCGGAGAGGATGATTCTGGAACCGGCAACGGCGTCGCCATGGAGGTACCGGCGCGGAAGCTTCTGGAGCAAACGGCCATCGCCATTCGGATCTCTACCAAAGGCGAGAGTGTTCTCGTTCCGATACTACAGAGGAATGAAGTCACCGTTCTTCAGACGGAGAGGAGGATTCTTTCCACTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGCGGAGGTTCGTCGAGACGGAGCAAGTCAATGACGAGCCCGATGTTTCTCCGCTCATCGGTAACCGGCGGAGGCGCGGCGGCGTTCTCATCGAGCCGGTTGCGGTGCGGAGATCCCGAAGCGTTACTGTCACCGGAGAGATTCAACCGAAGATGAGAGAAGAAGAAAAAAAAGTAAAGAAGAAACGCTCGGACACGTGTGCGGGCAGGATGAGCGAGAGAGAGGAAAGAAACGGACGGTGGGAGATAGGGCGGAGGAAGAAGAGCGATGCGACGGCGGAGGCGGAGTTAATGGCGGTGGAGAGAGAAAGAGAGAGAGCGAGGAGAGAGAGAAATGGAGGGATTTAA 1314 57.61 MPTSPSPSPSPSTSSSSAAAANFPPPSSLQPAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRRHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDAFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLAEGSNQRQRLLAEAIVFIRIRTEPSVGEDDSGTGNGVAMEVPARKLLEQTAIAIRISTKGESVLVPILQRNEVTVLQTERRILSTIGIKLEILQRRRRRFVETEQVNDEPDVSPLIGNRRRRGGVLIEPVAVRRSRSVTVTGEIQPKMREEEKKVKKKRSDTCAGRMSEREERNGRWEIGRRKKSDATAEAELMAVERERERARRERNGGI 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36814080 36815482 - Maker00001262 Lcy8g1080 639972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1080 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 195 IPR013083 -
Lcy8g1080 437 PANTHER RING-H2 FINGER PROTEIN ATL16 17 230 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Lcy8g1080 437 MobiDBLite consensus disorder prediction 375 437 - -
Lcy8g1080 437 Pfam Ring finger domain 148 191 IPR001841 -
Lcy8g1080 437 Coils Coil 412 432 - -
Lcy8g1080 437 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Lcy8g1080 437 SMART ring_2 149 190 IPR001841 -
Lcy8g1080 437 FunFam RING-H2 finger protein ATL65 120 195 - -
Lcy8g1080 437 CDD RING-H2_EL5-like 148 191 - -
Lcy8g1080 437 MobiDBLite consensus disorder prediction 10 24 - -
Lcy8g1080 437 MobiDBLite consensus disorder prediction 1 24 - -
Lcy8g1080 437 SUPERFAMILY RING/U-box 145 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1080 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0801 Lcy-Chr6:7986559 Lcy8g1080 Lcy-Chr8:36814080 2.00E-13 dispersed
Lcy8g1080 Lcy-Chr8:36814080 Lcy8g1730 Lcy-Chr8:43798260 1.57E-22 dispersed
Lcy8g1080 Lcy-Chr8:36814080 Lcy11g1657 Lcy-Chr11:40415232 2.01E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g1199 . 77 589 C3H Transcription Factor Family AT2G31510 73.3 5.0e-225 777.7
Lcy4g1368 . 112 286 C3H Transcription Factor Family AT2G31510 75.6 2.8e-66 250.4
Lcy4g1367 . 701 807 C3H Transcription Factor Family AT2G31510 77.9 2.1e-50 197.6
Lcy4g1363 . 774 866 C3H Transcription Factor Family AT2G31510 77.4 8.7e-44 175.6
Lcy3g1199 . 60 547 C3H Transcription Factor Family AT2G31770 56.7 8.4e-165 577.8
Lcy4g1368 . 113 260 C3H Transcription Factor Family AT2G31770 61.7 1.6e-43 174.9
Lcy3g1199 . 60 554 C3H Transcription Factor Family AT2G31760 55.1 1.7e-162 570.1
Lcy4g1368 . 113 245 C3H Transcription Factor Family AT2G31760 64.2 1.2e-43 175.3
Lcy1g1205 . 8 167 C3H Transcription Factor Family AT5G06490 52.5 7.0e-45 177.9
Lcy1g1205 . 8 167 C3H Transcription Factor Family AT5G06490 52.5 7.0e-45 177.9
Lcy10g2079 . 1 222 C3H Transcription Factor Family AT3G02290 61.3 1.6e-72 270.0
Lcy2g0769 . 1 335 C3H Transcription Factor Family AT1G11020 70.5 2.5e-132 469.2
Lcy13g0045 . 59 218 C3H Transcription Factor Family AT1G50440 75.6 1.2e-67 253.8
Lcy1g2340 . 8 305 C3H Transcription Factor Family AT5G08750 57.9 2.3e-89 326.6
Lcy6g0352 . 1 536 C3H Transcription Factor Family AT3G16090 62.8 1.4e-171 600.1
Lcy10g2079 . 1 220 C3H Transcription Factor Family AT5G38895 56.1 5.3e-69 258.8
Lcy13g2012 . 134 345 C3H Transcription Factor Family AT1G19310 66.4 1.0e-79 293.9
Lcy1g1061 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 6.1e-69 258.1
Lcy1g0754 . 9 257 C3H Transcription Factor Family AT2G22120 50.9 1.4e-78 290.8
Lcy13g1620 . 58 168 C3H Transcription Factor Family AT5G07040 64.9 6.1e-39 157.9
Lcy2g0454 . 1 337 C3H Transcription Factor Family AT1G18470 75.6 1.6e-150 530.0
Lcy10g0895 . 11 405 C3H Transcription Factor Family AT1G18470 58.3 2.4e-127 453.0
Lcy10g1463 . 74 300 C3H Transcription Factor Family AT1G68200 51.7 6.0e-51 198.7
Lcy3g1199 . 60 547 C3H Transcription Factor Family AT2G31770 56.7 8.4e-165 577.8
Lcy4g1368 . 113 260 C3H Transcription Factor Family AT2G31770 61.7 1.6e-43 174.9
Lcy3g1199 . 60 554 C3H Transcription Factor Family AT2G31760 55.1 1.7e-162 570.1
Lcy4g1368 . 113 245 C3H Transcription Factor Family AT2G31760 64.2 1.2e-43 175.3
Lcy9g1080 . 119 349 C3H Transcription Factor Family AT5G55970 69.4 1.6e-94 343.6
Lcy1g2340 . 8 321 C3H Transcription Factor Family AT5G63780 51.9 4.9e-84 308.9
Lcy5g0587 . 1 426 C3H Transcription Factor Family AT3G58030 54.8 1.9e-111 400.2
Lcy9g1080 . 108 413 C3H Transcription Factor Family AT4G26580 63.4 6.2e-110 394.8
Lcy1g1641 . 28 584 C3H Transcription Factor Family AT5G01960 59.1 4.4e-161 565.1
Lcy7g1098 . 1 559 C3H Transcription Factor Family AT5G01960 50.6 3.6e-139 492.3
Lcy8g1343 . 63 217 C3H Transcription Factor Family AT2G04240 57.1 4.9e-44 174.9
Lcy6g0752 . 136 574 C3H Transcription Factor Family AT5G45290 51.5 1.1e-95 348.2
Lcy2g0339 . 76 368 C3H Transcription Factor Family AT5G05810 51.9 1.5e-73 274.2
Lcy10g2219 . 12 218 C3H Transcription Factor Family AT5G05830 55.2 5.8e-58 221.5
Lcy5g0151 . 70 231 C3H Transcription Factor Family AT5G05830 63.6 4.9e-57 218.4
Lcy1g1521 . 31 170 C3H Transcription Factor Family AT5G05830 62.9 9.5e-45 177.6
Lcy2g0847 . 455 842 C3H Transcription Factor Family AT4G28890 50.9 1.0e-96 351.3
Lcy10g2079 . 1 222 C3H Transcription Factor Family AT5G15790 59.6 3.6e-72 268.9
Lcy10g2248 . 1 272 C3H Transcription Factor Family AT3G55530 79.9 1.5e-114 409.8
Lcy3g1640 . 27 299 C3H Transcription Factor Family AT1G63900 75.2 5.7e-117 417.9
Lcy11g1838 . 10 394 C3H Transcription Factor Family AT2G44580 53.4 2.5e-118 422.9
Lcy13g2012 . 143 268 C3H Transcription Factor Family AT1G74990 59.8 1.3e-40 163.3
Lcy9g1923 . 3 315 C3H Transcription Factor Family AT5G20910 63.3 7.5e-110 394.4
Lcy6g0352 . 119 536 C3H Transcription Factor Family AT1G65040 55.0 1.1e-111 400.6
Lcy1g1061 . 17 227 C3H Transcription Factor Family AT2G23780 61.2 1.1e-73 273.9
Lcy13g2012 . 124 347 C3H Transcription Factor Family AT2G23780 56.5 1.4e-68 256.9
Lcy5g0913 . 1 314 C3H Transcription Factor Family AT3G10810 52.7 6.6e-76 282.3
Lcy1g1764 . 145 383 C3H Transcription Factor Family AT3G10810 61.1 6.4e-71 265.8
Lcy12g1628 . 1 168 C3H Transcription Factor Family AT1G63840 59.1 1.8e-46 183.0
Lcy13g0728 . 1 154 C3H Transcription Factor Family AT1G63840 51.9 1.4e-41 166.8
Lcy9g2343 . 4 181 C3H Transcription Factor Family AT1G76410 56.6 1.2e-51 200.3
Lcy6g2365 . 32 171 C3H Transcription Factor Family AT1G76410 60.7 3.6e-43 172.2
Lcy13g1313 . 1 410 C3H Transcription Factor Family AT1G80400 53.3 4.7e-112 402.1
Lcy6g2365 . 27 162 C3H Transcription Factor Family AT2G17450 60.0 3.2e-39 159.1
Lcy3g1199 . 77 589 C3H Transcription Factor Family AT2G31510 73.3 5.0e-225 777.7
Lcy4g1368 . 112 286 C3H Transcription Factor Family AT2G31510 75.6 2.8e-66 250.4
Lcy4g1367 . 701 807 C3H Transcription Factor Family AT2G31510 77.9 2.1e-50 197.6
Lcy4g1363 . 774 866 C3H Transcription Factor Family AT2G31510 77.4 8.7e-44 175.6
Lcy1g1205 . 7 166 C3H Transcription Factor Family AT2G35910 61.7 2.3e-52 203.0
Lcy5g0504 . 6 162 C3H Transcription Factor Family AT2G35910 52.8 1.7e-44 176.8
Lcy5g0512 . 6 162 C3H Transcription Factor Family AT2G35910 52.8 1.7e-44 176.8
Lcy1g2128 . 1 308 C3H Transcription Factor Family AT2G41980 81.8 1.2e-152 536.6
Lcy8g2151 . 162 458 C3H Transcription Factor Family AT2G41980 72.9 3.2e-129 458.8
Lcy6g0069 . 61 318 C3H Transcription Factor Family AT2G41980 81.0 9.3e-129 457.2
Lcy6g0068 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 2.1e-128 456.1
Lcy10g1027 . 48 321 C3H Transcription Factor Family AT2G41980 75.2 3.4e-123 438.7
Lcy7g0691 . 118 471 C3H Transcription Factor Family AT2G41980 59.2 2.6e-115 412.5
Lcy4g0830 . 203 437 C3H Transcription Factor Family AT2G41980 75.7 1.5e-110 396.7
Lcy11g1506 . 121 358 C3H Transcription Factor Family AT3G06140 58.0 1.0e-73 274.6
Lcy5g0283 . 33 329 C3H Transcription Factor Family AT3G09770 58.9 1.7e-86 317.0
Lcy10g0046 . 136 680 C3H Transcription Factor Family AT3G26730 55.7 1.3e-165 580.9
Lcy5g2227 . 59 344 C3H Transcription Factor Family AT3G47990 71.1 5.0e-119 424.9
Lcy2g0651 . 110 396 C3H Transcription Factor Family AT3G47990 65.4 1.7e-114 409.8
Lcy9g2343 . 4 187 C3H Transcription Factor Family AT1G20823 56.5 1.2e-52 203.8
Lcy6g2365 . 30 171 C3H Transcription Factor Family AT1G20823 63.2 3.7e-46 182.2
Lcy8g1080 . 35 223 C3H Transcription Factor Family AT3G18930 57.6 3.0e-45 180.3
Lcy6g2328 . 20 236 C3H Transcription Factor Family AT5G66070 73.7 7.3e-75 277.7
Lcy5g0151 . 9 231 C3H Transcription Factor Family AT2G37950 50.9 1.2e-47 187.2
Lcy5g0241 . 1 262 C3H Transcription Factor Family AT5G02750 54.7 2.6e-69 259.6
Lcy2g0454 . 5 337 C3H Transcription Factor Family AT1G73950 67.3 2.6e-124 443.0
Lcy10g0895 . 12 409 C3H Transcription Factor Family AT1G73950 53.2 4.8e-110 395.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013374 0 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 27