Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1080 ATGCCGACCTCCCCTTCCCCTTCCCCTTCCCCATCCACCTCTTCCTCCTCCGCCGCCGCCGCCAATTTCCCTCCACCATCCTCCTTACAGCCTGCAAAGCTCCCCGTCGACTTCAGCCCTCCTCTAATCGCCATGGTCGTCGTCATCGCCACTGCCTTTCTCATTGTAACTTACTCTCGCCTCATCTCCCGCCACCTCATCCCTCCGATCCTCCACCTTCTCCGCCGCCACCGCCGCCGATGGAGGCGGTGGCGGCGACGGCGACGTCGAGCTCGATCTTACCTTCCGTCGTCATCCGGCGGCGACCTGGATTCTCTCCCTTACGATTCGCCTTTCTTCGAGCCTACCGATGCCTTCCACGTGTTCTCTCCGTACGGCCTCGACGAATCCGTCATCAAGACGATTCCGCTCTCGGTCTACACTGCCAAGAGTCGCGACCGTGAGTGCGCCGTTTGTCTTCTGGAGTTCGAAGACGATGATTACGTCCGTACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCGCTCTGTCGCGCGGTGGTTTTCCGACCGGAGTCTCCGTTCACGCCGGTCATGGCGGCCAGAATCCGGCCGAGCCTCGACGATACGATCTTACGGAGCATCGTATTGGAGCCGCTCGCGGAAGGATCAAATCAACGGCAGAGACTTCTTGCTGAAGCGATCGTATTCATTCGGATTCGAACGGAGCCTAGCGTCGGAGAGGATGATTCTGGAACCGGCAACGGCGTCGCCATGGAGGTACCGGCGCGGAAGCTTCTGGAGCAAACGGCCATCGCCATTCGGATCTCTACCAAAGGCGAGAGTGTTCTCGTTCCGATACTACAGAGGAATGAAGTCACCGTTCTTCAGACGGAGAGGAGGATTCTTTCCACTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGCGGAGGTTCGTCGAGACGGAGCAAGTCAATGACGAGCCCGATGTTTCTCCGCTCATCGGTAACCGGCGGAGGCGCGGCGGCGTTCTCATCGAGCCGGTTGCGGTGCGGAGATCCCGAAGCGTTACTGTCACCGGAGAGATTCAACCGAAGATGAGAGAAGAAGAAAAAAAAGTAAAGAAGAAACGCTCGGACACGTGTGCGGGCAGGATGAGCGAGAGAGAGGAAAGAAACGGACGGTGGGAGATAGGGCGGAGGAAGAAGAGCGATGCGACGGCGGAGGCGGAGTTAATGGCGGTGGAGAGAGAAAGAGAGAGAGCGAGGAGAGAGAGAAATGGAGGGATTTAA 1314 57.61 MPTSPSPSPSPSTSSSSAAAANFPPPSSLQPAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRRHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDAFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLAEGSNQRQRLLAEAIVFIRIRTEPSVGEDDSGTGNGVAMEVPARKLLEQTAIAIRISTKGESVLVPILQRNEVTVLQTERRILSTIGIKLEILQRRRRRFVETEQVNDEPDVSPLIGNRRRRGGVLIEPVAVRRSRSVTVTGEIQPKMREEEKKVKKKRSDTCAGRMSEREERNGRWEIGRRKKSDATAEAELMAVERERERARRERNGGI 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36814080 36815482 - Maker00001262 Lcy8g1080 639972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1080 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 195 IPR013083 -
Lcy8g1080 437 PANTHER RING-H2 FINGER PROTEIN ATL16 17 230 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Lcy8g1080 437 MobiDBLite consensus disorder prediction 375 437 - -
Lcy8g1080 437 Pfam Ring finger domain 148 191 IPR001841 -
Lcy8g1080 437 Coils Coil 412 432 - -
Lcy8g1080 437 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Lcy8g1080 437 SMART ring_2 149 190 IPR001841 -
Lcy8g1080 437 FunFam RING-H2 finger protein ATL65 120 195 - -
Lcy8g1080 437 CDD RING-H2_EL5-like 148 191 - -
Lcy8g1080 437 MobiDBLite consensus disorder prediction 10 24 - -
Lcy8g1080 437 MobiDBLite consensus disorder prediction 1 24 - -
Lcy8g1080 437 SUPERFAMILY RING/U-box 145 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0801 Lcy-Chr6:7986559 Lcy8g1080 Lcy-Chr8:36814080 2.00E-13 dispersed
Lcy8g1080 Lcy-Chr8:36814080 Lcy8g1730 Lcy-Chr8:43798260 1.57E-22 dispersed
Lcy8g1080 Lcy-Chr8:36814080 Lcy11g1657 Lcy-Chr11:40415232 2.01E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1080 - - - 0.0