Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1087 ATGGAGGACTGCATCAGCAGCGATGAGGACTACTATGACTCCGATCGAGAGTCTCTCCATGGTCTCGAGAACGAGGACTCTGAAATTCAGTGGGCCCCTAAAGGTCCTGCCACTAAGGTTATTACGAAAGAATCGCTTCTTGCAGCACAGAAGGAGGACATGCGTAGAGTAATGGAAATGCTGTCGTTGAGGGAATATCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAAAAATTGTTTGCGGTACTTGTGGAGAAGGGGAGGAGTCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCAAAGTAATAGTTCCTCTGAGCCTTCCTCCATGGTGATGTGCGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTGGACTGTGGGCATTGCTTTTGTAACAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCATAAATGCAATGCTATTTGTGATGAGGCTGTTGTTAGGAATCTAGTTAGTAAGAGGCATCCAGATCTTGCAAATAAATTTGATCGTTTTCTTCTTGAGTCATACATTGAGGATAACAAAAGAGTCAAATGGTGTCCAAGTACACCTCACTGTGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGCCTTCAATTTTGTTTCAGTTGCTTATCAGAAGCTCACTCGCCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAGTCTGAAACAGTTAACTGGATTACGGTACATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTGGAGAAGAATGGTGGCTGTAACCTCGTCAGCTGCATCTGTGGACAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAGCACACTTGGTCAAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAATCAGAGCAGAAAGCTGAACGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTATAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAGGATGAGATGACCCAGGAGGAAAGAGAGATAAAGCAGCATCTATTTGAGGACCAACAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCAAAGTTTTTAGAGGAACCATTTGATCAATACACTAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCAGTTATCACTGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTTTGGGTACTCTTGAACTGGGTATTCACAATATTGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCTCTGGAACTTTCTGCTTGTTGGAACAGCAAAGCAAATACTACTGACAAATATTTGCCATCTGACTGTGGTACAAGTGGAGGATTGTCAGAACGCGATCGACTGACTGGCTTGAATTCGGACGAGAAGGGATGCTCGTCTAGGAAGCGTGCCAGAGCAGAAGTTGTTACTGGCAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGATAGAAACTGA 1770 43.05 MEDCISSDEDYYDSDRESLHGLENEDSEIQWAPKGPATKVITKESLLAAQKEDMRRVMEMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRSHLFATAGVTMIENQSNSSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGTLELGIHNIAPYKSKGIEKALELSACWNSKANTTDKYLPSDCGTSGGLSERDRLTGLNSDEKGCSSRKRARAEVVTGNFFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36902164 36907660 + Maker00001201 Lcy8g1087 639979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1087 589 CDD BRcat_RBR_ANKIB1 197 261 - -
Lcy8g1087 589 SUPERFAMILY RING/U-box 114 202 - -
Lcy8g1087 589 CDD RING-HC_RBR_TRIAD1 117 170 - -
Lcy8g1087 589 CDD Rcat_RBR_ARI1-like 273 326 - -
Lcy8g1087 589 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
Lcy8g1087 589 SUPERFAMILY RING/U-box 260 325 - -
Lcy8g1087 589 SUPERFAMILY RING/U-box 191 259 - -
Lcy8g1087 589 Pfam IBR domain 272 314 IPR054694 -
Lcy8g1087 589 Gene3D - 248 496 - -
Lcy8g1087 589 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
Lcy8g1087 589 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 83 IPR048962 -
Lcy8g1087 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Lcy8g1087 589 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
Lcy8g1087 589 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
Lcy8g1087 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 360 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lcy8g1087 589 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
Lcy8g1087 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Lcy8g1087 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Lcy8g1087 589 Pfam Ariadne domain 329 589 IPR045840 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1087 K11968 - - csv:101205066 1155.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1087 Lcy-Chr8:36902164 Lcy4g1363 Lcy-Chr4:33162432 6.64E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g1087 . 164 590 ARIADNE family AT4G34370 72.0 1.9e-183 639.4
Lcy8g1087 . 58 542 ARIADNE family AT2G16090 77.4 1.0e-225 780.0
Lcy8g1087 . 38 543 ARIADNE family AT3G27710 61.6 4.0e-183 638.6
Lcy8g1087 . 44 522 ARIADNE family AT3G27720 54.7 5.7e-144 508.4
Lcy3g1199 . 61 560 ARIADNE family AT1G05890 70.2 5.7e-215 744.6
Lcy4g1368 . 112 258 ARIADNE family AT1G05890 70.1 2.3e-54 211.1
Lcy4g1367 . 704 806 ARIADNE family AT1G05890 79.8 2.6e-50 197.6
Lcy4g1363 . 774 866 ARIADNE family AT1G05890 73.1 5.4e-40 163.3
Lcy3g1199 . 16 613 ARIADNE family AT1G65430 66.9 2.6e-241 832.0
Lcy4g1368 . 112 314 ARIADNE family AT1G65430 70.4 6.4e-75 279.3
Lcy4g1367 . 701 807 ARIADNE family AT1G65430 80.5 4.1e-53 206.8
Lcy4g1363 . 773 866 ARIADNE family AT1G65430 85.1 1.7e-46 184.9
Lcy4g1363 . 18 133 ARIADNE family AT1G65430 62.9 2.6e-39 161.0
Lcy3g1199 . 58 479 ARIADNE family AT2G31780 54.7 1.3e-139 493.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46