Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1105 ATGTCGGATTCTCCGCCTCCTTCTTCTTCCGATTCCGATTCCGATTCCTCTACCCCGCCGCCCTTCCCACCCCCGTCTGACTCTTCTCCACCTCCCTCCGCTTCACCGCCCCCGGATGCTTCTCCGCCTCCGCCGGATTCCTCCCCTCCTCCGCCCGATTCGTCTCCACCTCCGCCGGATGAGTCCTCTTCTCCTCCTCCGCCGAGTGCATCACCGCCGCCTCCCAAAGATTCCTCTTCGCCACCGCCACCGCCGAAGGACTCGAAGTCTCCGTCGTCTCCTCCATCTCCATCTCAGCCGCCTCCTCCGCCACCTCCACCGCCGCCGCCTCCTTCGCCGCCCGGATCCCCTTCCAGGCATTCTCCTCCACCTCCCCGATCGATCTCCTCCCCACCTAATTCCCGATCGTCAGACTCCTCGTCCGGCGGGTCTACGCCCCCGGCGGTGCCGATCATTGTAGGAGTGGCGGTGGCGGCTGGTTTTTTGCTATTCGCCATGGCGTTGATATTCTTCGCTTGCACCAGAAAGAAAAAGAAGAGAAGTAATAATTCCATGTACTACGATGATCAGCCTGGTCCAAAAGGTGGAGATCCATATTACAACGGAAGGAATAACAACTGGAACAACCCGAGCGAACACTTCGTGAACATGGCGCCAATCAGCGGCGGAGGTCAAGGAGGAGGAGGAGGAGGATGGCCGTCGCCGCCACCGCCGCCGCCGCCAGGATTAGTGAGCAGTGACATGAGCTCGAATTTCTCAGGGCCACACGGGCCGCCGTTGCCGCCGCCGCACCCGTCGGTGGCGCTGGGGTTCAACAAGAGCACGTTCACGTACGACGAGCTGGTGGCGGCGACGGGAGGATTCTCTCCGGCGAACTTGCTGGGGCAAGGGGGATTCGGGTACGTTCATAAAGGATTGCTGCCCAACGGCAAGGAAATCGCAGTGAAAAGCCTGAAAACGGGTAGCGGGCAAGGAGATCGGGAATTCGCGGCGGAAGTGGAGATCATTAGCCGCGTCCACCACCGCCATTTGGTGTCCCTCGTCGGATATTGCATCTCCGGTGACCGGAAGATGTTGGTTTACGAATTTGTTCCTAATAACAACCTCGAATTCCACCTCCACGGAAAGGGGCGGCCACCAATGGACTGGTCAACGAGGGTGAAGATTGCATTGGGCTCAGCCAAGGGCCTGGCCTATCTCCACGAAGACTGTCATCCTCGCATCATCCATAGAGACATCAAGACTGCAAATATTCTTATAGACATGAGTTTCGAAGCCAAGGTGGCCGATTTCGGATTGGCAAAGCTCAACCAGGACAATTACACTCACGTATCCACTCGCGTTATGGGCACATTTGGATATTTGGCTCCGGAGTACGCATCAAGTGGGAAGCTAACAGAGAAATCAGATGTATTCTCATATGGTGTAATGCTTTTGGAACTGATAACCGGAAGACGACCGGTGGACCCGACCGGGGATATGGAGGACAGCTTAGTGGACTGGTCGAGACCTCTTTGCTTGAAAGCAATGGGTGATGGAAACTACGAGGAGTTGGCTGATCCACGGCTAGAGAAGAACTTCGATGTCCAGGAAATGATTCGCATGGTCGCTTGCGCCGAGGATTTGAACGACGGGGTAAAGCCAGGGCAGAGCTCGTACTTTGGGTCCGGCACGTCGTCCGAGTACGACGCAAGCTCGTACAGCGCGGACATGAAAAGGTTTAGAAAGGTAGCGTTGGACAGCCGCGAGTACACGAGTAGTGACTACGGCGGCACGAGCGAGTACGGGCTAAACCCATCCTCAACGAGCAGCGACAACAGCCAGAAGCCCAGTCACCAAGCTTCCCCCAATTTACCGCCCAACAATCCCTAA 1872 57.0 MSDSPPPSSSDSDSDSSTPPPFPPPSDSSPPPSASPPPDASPPPPDSSPPPPDSSPPPPDESSSPPPPSASPPPPKDSSSPPPPPKDSKSPSSPPSPSQPPPPPPPPPPPPSPPGSPSRHSPPPPRSISSPPNSRSSDSSSGGSTPPAVPIIVGVAVAAGFLLFAMALIFFACTRKKKKRSNNSMYYDDQPGPKGGDPYYNGRNNNWNNPSEHFVNMAPISGGGQGGGGGGWPSPPPPPPPGLVSSDMSSNFSGPHGPPLPPPHPSVALGFNKSTFTYDELVAATGGFSPANLLGQGGFGYVHKGLLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCISGDRKMLVYEFVPNNNLEFHLHGKGRPPMDWSTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDPTGDMEDSLVDWSRPLCLKAMGDGNYEELADPRLEKNFDVQEMIRMVACAEDLNDGVKPGQSSYFGSGTSSEYDASSYSADMKRFRKVALDSREYTSSDYGGTSEYGLNPSSTSSDNSQKPSHQASPNLPPNNP 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37163932 37169412 + Maker00000960 Lcy8g1105 639997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1105 623 ProSiteProfiles Protein kinase domain profile. 288 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1105 623 MobiDBLite consensus disorder prediction 585 615 - -
Lcy8g1105 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1105 623 MobiDBLite consensus disorder prediction 179 264 - -
Lcy8g1105 623 MobiDBLite consensus disorder prediction 17 130 - -
Lcy8g1105 623 Pfam Protein tyrosine and serine/threonine kinase 293 489 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy8g1105 623 MobiDBLite consensus disorder prediction 1 16 - -
Lcy8g1105 623 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
Lcy8g1105 623 SUPERFAMILY Protein kinase-like (PK-like) 263 498 IPR011009 -
Lcy8g1105 623 SMART serkin_6 288 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1105 623 MobiDBLite consensus disorder prediction 582 623 - -
Lcy8g1105 623 FunFam Proline-rich receptor-like protein kinase PERK4 364 545 - -
Lcy8g1105 623 Gene3D Transferase(Phosphotransferase) domain 1 364 544 - -
Lcy8g1105 623 Gene3D Phosphorylase Kinase; domain 1 265 363 - -
Lcy8g1105 623 MobiDBLite consensus disorder prediction 201 215 - -
Lcy8g1105 623 FunFam proline-rich receptor-like protein kinase PERK1 266 363 - -
Lcy8g1105 623 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 116 539 IPR047117 -
Lcy8g1105 623 MobiDBLite consensus disorder prediction 1 145 - -
Lcy8g1105 623 MobiDBLite consensus disorder prediction 131 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0958 Lcy-Chr6:9927952 Lcy8g1105 Lcy-Chr8:37163932 1.68E-174 dispersed
Lcy7g0396 Lcy-Chr7:3370972 Lcy8g1105 Lcy-Chr8:37163932 1.02E-118 dispersed
Lcy8g1105 Lcy-Chr8:37163932 Lcy6g1411 Lcy-Chr6:20994050 7.16E-82 dispersed
Lcy8g1105 Lcy-Chr8:37163932 Lcy8g1110 Lcy-Chr8:37271946 2.14E-35 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66113 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1105 - - - 0.0