Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1105 | ATGTCGGATTCTCCGCCTCCTTCTTCTTCCGATTCCGATTCCGATTCCTCTACCCCGCCGCCCTTCCCACCCCCGTCTGACTCTTCTCCACCTCCCTCCGCTTCACCGCCCCCGGATGCTTCTCCGCCTCCGCCGGATTCCTCCCCTCCTCCGCCCGATTCGTCTCCACCTCCGCCGGATGAGTCCTCTTCTCCTCCTCCGCCGAGTGCATCACCGCCGCCTCCCAAAGATTCCTCTTCGCCACCGCCACCGCCGAAGGACTCGAAGTCTCCGTCGTCTCCTCCATCTCCATCTCAGCCGCCTCCTCCGCCACCTCCACCGCCGCCGCCTCCTTCGCCGCCCGGATCCCCTTCCAGGCATTCTCCTCCACCTCCCCGATCGATCTCCTCCCCACCTAATTCCCGATCGTCAGACTCCTCGTCCGGCGGGTCTACGCCCCCGGCGGTGCCGATCATTGTAGGAGTGGCGGTGGCGGCTGGTTTTTTGCTATTCGCCATGGCGTTGATATTCTTCGCTTGCACCAGAAAGAAAAAGAAGAGAAGTAATAATTCCATGTACTACGATGATCAGCCTGGTCCAAAAGGTGGAGATCCATATTACAACGGAAGGAATAACAACTGGAACAACCCGAGCGAACACTTCGTGAACATGGCGCCAATCAGCGGCGGAGGTCAAGGAGGAGGAGGAGGAGGATGGCCGTCGCCGCCACCGCCGCCGCCGCCAGGATTAGTGAGCAGTGACATGAGCTCGAATTTCTCAGGGCCACACGGGCCGCCGTTGCCGCCGCCGCACCCGTCGGTGGCGCTGGGGTTCAACAAGAGCACGTTCACGTACGACGAGCTGGTGGCGGCGACGGGAGGATTCTCTCCGGCGAACTTGCTGGGGCAAGGGGGATTCGGGTACGTTCATAAAGGATTGCTGCCCAACGGCAAGGAAATCGCAGTGAAAAGCCTGAAAACGGGTAGCGGGCAAGGAGATCGGGAATTCGCGGCGGAAGTGGAGATCATTAGCCGCGTCCACCACCGCCATTTGGTGTCCCTCGTCGGATATTGCATCTCCGGTGACCGGAAGATGTTGGTTTACGAATTTGTTCCTAATAACAACCTCGAATTCCACCTCCACGGAAAGGGGCGGCCACCAATGGACTGGTCAACGAGGGTGAAGATTGCATTGGGCTCAGCCAAGGGCCTGGCCTATCTCCACGAAGACTGTCATCCTCGCATCATCCATAGAGACATCAAGACTGCAAATATTCTTATAGACATGAGTTTCGAAGCCAAGGTGGCCGATTTCGGATTGGCAAAGCTCAACCAGGACAATTACACTCACGTATCCACTCGCGTTATGGGCACATTTGGATATTTGGCTCCGGAGTACGCATCAAGTGGGAAGCTAACAGAGAAATCAGATGTATTCTCATATGGTGTAATGCTTTTGGAACTGATAACCGGAAGACGACCGGTGGACCCGACCGGGGATATGGAGGACAGCTTAGTGGACTGGTCGAGACCTCTTTGCTTGAAAGCAATGGGTGATGGAAACTACGAGGAGTTGGCTGATCCACGGCTAGAGAAGAACTTCGATGTCCAGGAAATGATTCGCATGGTCGCTTGCGCCGAGGATTTGAACGACGGGGTAAAGCCAGGGCAGAGCTCGTACTTTGGGTCCGGCACGTCGTCCGAGTACGACGCAAGCTCGTACAGCGCGGACATGAAAAGGTTTAGAAAGGTAGCGTTGGACAGCCGCGAGTACACGAGTAGTGACTACGGCGGCACGAGCGAGTACGGGCTAAACCCATCCTCAACGAGCAGCGACAACAGCCAGAAGCCCAGTCACCAAGCTTCCCCCAATTTACCGCCCAACAATCCCTAA | 1872 | 57.0 | MSDSPPPSSSDSDSDSSTPPPFPPPSDSSPPPSASPPPDASPPPPDSSPPPPDSSPPPPDESSSPPPPSASPPPPKDSSSPPPPPKDSKSPSSPPSPSQPPPPPPPPPPPPSPPGSPSRHSPPPPRSISSPPNSRSSDSSSGGSTPPAVPIIVGVAVAAGFLLFAMALIFFACTRKKKKRSNNSMYYDDQPGPKGGDPYYNGRNNNWNNPSEHFVNMAPISGGGQGGGGGGWPSPPPPPPPGLVSSDMSSNFSGPHGPPLPPPHPSVALGFNKSTFTYDELVAATGGFSPANLLGQGGFGYVHKGLLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCISGDRKMLVYEFVPNNNLEFHLHGKGRPPMDWSTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDPTGDMEDSLVDWSRPLCLKAMGDGNYEELADPRLEKNFDVQEMIRMVACAEDLNDGVKPGQSSYFGSGTSSEYDASSYSADMKRFRKVALDSREYTSSDYGGTSEYGLNPSSTSSDNSQKPSHQASPNLPPNNP | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 37163932 | 37169412 | + | Maker00000960 | Lcy8g1105 | 639997 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1105 | 623 | ProSiteProfiles | Protein kinase domain profile. | 288 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g1105 | 623 | MobiDBLite | consensus disorder prediction | 585 | 615 | - | - | |
Lcy8g1105 | 623 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 408 | 420 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy8g1105 | 623 | MobiDBLite | consensus disorder prediction | 179 | 264 | - | - | |
Lcy8g1105 | 623 | MobiDBLite | consensus disorder prediction | 17 | 130 | - | - | |
Lcy8g1105 | 623 | Pfam | Protein tyrosine and serine/threonine kinase | 293 | 489 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy8g1105 | 623 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Lcy8g1105 | 623 | ProSitePatterns | Protein kinases ATP-binding region signature. | 294 | 316 | IPR017441 | GO:0005524(InterPro) | |
Lcy8g1105 | 623 | SUPERFAMILY | Protein kinase-like (PK-like) | 263 | 498 | IPR011009 | - | |
Lcy8g1105 | 623 | SMART | serkin_6 | 288 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g1105 | 623 | MobiDBLite | consensus disorder prediction | 582 | 623 | - | - | |
Lcy8g1105 | 623 | FunFam | Proline-rich receptor-like protein kinase PERK4 | 364 | 545 | - | - | |
Lcy8g1105 | 623 | Gene3D | Transferase(Phosphotransferase) domain 1 | 364 | 544 | - | - | |
Lcy8g1105 | 623 | Gene3D | Phosphorylase Kinase; domain 1 | 265 | 363 | - | - | |
Lcy8g1105 | 623 | MobiDBLite | consensus disorder prediction | 201 | 215 | - | - | |
Lcy8g1105 | 623 | FunFam | proline-rich receptor-like protein kinase PERK1 | 266 | 363 | - | - | |
Lcy8g1105 | 623 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 116 | 539 | IPR047117 | - | |
Lcy8g1105 | 623 | MobiDBLite | consensus disorder prediction | 1 | 145 | - | - | |
Lcy8g1105 | 623 | MobiDBLite | consensus disorder prediction | 131 | 145 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g0958 | Lcy-Chr6:9927952 | Lcy8g1105 | Lcy-Chr8:37163932 | 1.68E-174 | dispersed | |
Lcy7g0396 | Lcy-Chr7:3370972 | Lcy8g1105 | Lcy-Chr8:37163932 | 1.02E-118 | dispersed | |
Lcy8g1105 | Lcy-Chr8:37163932 | Lcy6g1411 | Lcy-Chr6:20994050 | 7.16E-82 | dispersed | |
Lcy8g1105 | Lcy-Chr8:37163932 | Lcy8g1110 | Lcy-Chr8:37271946 | 2.14E-35 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66113 | None | None | None | None | Lcy | PK |
Pathway information
