Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1118 | ATGTTGAAGTCCGAGATGACGGTGGTCGAAACACAGACGGCTCGGGTCGAATGGCGTCGAGGCACCCACGGTGACTGTCGCACCTTGTCGTCCGTCTCGACTCCGGCGAGTCGGGTCGATGATTTTCAGGATCTCGTTGGAACTGGAGGTTGGACTGAGTTCGCTCGAAATGGGATCTCCTCGACGGAGTTTTCGACAAATCTGACTGTGTCAACAACTCAGACGTGTTCGCCTCCGCCAGAGGCGAACTCCGTGGGTGTGGGAGAGATTCCAAGGAAAAGAAAAACCAACAACAACAAGGAATTCAAATCCAAAGTGGGAAATGTCCAACTTGAGGCTGGAAAAAACAGAGAAAAAAGAATCAAACCAAATATTGAAGAAGAAGAAGAATCAAAGATTACAGAGCAAACAGAGACATCAAAACAGAATTCAAAAGCCTCCGAAGAAGTTCAAAAATCAGATTACGTTCATGTTAGAGCTCGTCGAGGCCAAGCCACAGACAGCCATAGTCTTGCAGAAAGAGCGAGGAGAGAGAAAATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTACCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATAAATTATGTTCAATCTCTTCAGCAACAAGTGGAGTTCTTGTCAATGAAGCTGGCTACTCTGAATCCGAGACTGGATTTCATCAATGTCGATGACCTCTTTTCCAAACAGGTGTTACCGACGATAGAAATCTCACCGGAAACGGCTAATTCTTACTTCAATGAACTCGGAACAGTCCCACAAACTCCATTGATGAACTCGGCTTCTATTACTAGCCTTGGGGCGCCATTGTTGTCGCCATCGAGCTTTTTATCGCAGCAATATCCAGGCATTGAAGATGAAAAGGAAACATTTGTAGACGACAAAGTTGTTGTTCCATTTTAA | 945 | 44.66 | MLKSEMTVVETQTARVEWRRGTHGDCRTLSSVSTPASRVDDFQDLVGTGGWTEFARNGISSTEFSTNLTVSTTQTCSPPPEANSVGVGEIPRKRKTNNNKEFKSKVGNVQLEAGKNREKRIKPNIEEEEESKITEQTETSKQNSKASEEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKLATLNPRLDFINVDDLFSKQVLPTIEISPETANSYFNELGTVPQTPLMNSASITSLGAPLLSPSSFLSQQYPGIEDEKETFVDDKVVVPF | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 37412607 | 37414886 | + | Maker00000510 | Lcy8g1118 | 640010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1118 | 314 | CDD | bHLH_AtBPE_like | 154 | 240 | - | - | |
Lcy8g1118 | 314 | MobiDBLite | consensus disorder prediction | 71 | 92 | - | - | |
Lcy8g1118 | 314 | FunFam | Basic helix-loop-helix transcription factor | 161 | 233 | - | - | |
Lcy8g1118 | 314 | Pfam | Helix-loop-helix DNA-binding domain | 168 | 215 | IPR011598 | GO:0046983(InterPro) | |
Lcy8g1118 | 314 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 91 | 262 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Lcy8g1118 | 314 | SMART | finulus | 170 | 220 | IPR011598 | GO:0046983(InterPro) | |
Lcy8g1118 | 314 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 164 | 214 | IPR011598 | GO:0046983(InterPro) | |
Lcy8g1118 | 314 | Gene3D | - | 161 | 235 | IPR036638 | GO:0046983(InterPro) | |
Lcy8g1118 | 314 | MobiDBLite | consensus disorder prediction | 111 | 152 | - | - | |
Lcy8g1118 | 314 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 162 | 234 | IPR036638 | GO:0046983(InterPro) | |
Lcy8g1118 | 314 | MobiDBLite | consensus disorder prediction | 112 | 136 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy7g0378 | Lcy-Chr7:3190844 | Lcy8g1118 | Lcy-Chr8:37412607 | 3.69E-40 | dispersed | |
Lcy8g1118 | Lcy-Chr8:37412607 | Lcy9g2004 | Lcy-Chr9:44925824 | 1.18E-38 | dispersed | |
Lcy3g1006 | Lcy-Chr3:33992068 | Lcy8g1118 | Lcy-Chr8:37412607 | 2.04E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20502 | None | None | None | None | Lcy | TF |
Pathway information
