Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1118 ATGTTGAAGTCCGAGATGACGGTGGTCGAAACACAGACGGCTCGGGTCGAATGGCGTCGAGGCACCCACGGTGACTGTCGCACCTTGTCGTCCGTCTCGACTCCGGCGAGTCGGGTCGATGATTTTCAGGATCTCGTTGGAACTGGAGGTTGGACTGAGTTCGCTCGAAATGGGATCTCCTCGACGGAGTTTTCGACAAATCTGACTGTGTCAACAACTCAGACGTGTTCGCCTCCGCCAGAGGCGAACTCCGTGGGTGTGGGAGAGATTCCAAGGAAAAGAAAAACCAACAACAACAAGGAATTCAAATCCAAAGTGGGAAATGTCCAACTTGAGGCTGGAAAAAACAGAGAAAAAAGAATCAAACCAAATATTGAAGAAGAAGAAGAATCAAAGATTACAGAGCAAACAGAGACATCAAAACAGAATTCAAAAGCCTCCGAAGAAGTTCAAAAATCAGATTACGTTCATGTTAGAGCTCGTCGAGGCCAAGCCACAGACAGCCATAGTCTTGCAGAAAGAGCGAGGAGAGAGAAAATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTACCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATAAATTATGTTCAATCTCTTCAGCAACAAGTGGAGTTCTTGTCAATGAAGCTGGCTACTCTGAATCCGAGACTGGATTTCATCAATGTCGATGACCTCTTTTCCAAACAGGTGTTACCGACGATAGAAATCTCACCGGAAACGGCTAATTCTTACTTCAATGAACTCGGAACAGTCCCACAAACTCCATTGATGAACTCGGCTTCTATTACTAGCCTTGGGGCGCCATTGTTGTCGCCATCGAGCTTTTTATCGCAGCAATATCCAGGCATTGAAGATGAAAAGGAAACATTTGTAGACGACAAAGTTGTTGTTCCATTTTAA 945 44.66 MLKSEMTVVETQTARVEWRRGTHGDCRTLSSVSTPASRVDDFQDLVGTGGWTEFARNGISSTEFSTNLTVSTTQTCSPPPEANSVGVGEIPRKRKTNNNKEFKSKVGNVQLEAGKNREKRIKPNIEEEEESKITEQTETSKQNSKASEEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKLATLNPRLDFINVDDLFSKQVLPTIEISPETANSYFNELGTVPQTPLMNSASITSLGAPLLSPSSFLSQQYPGIEDEKETFVDDKVVVPF 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37412607 37414886 + Maker00000510 Lcy8g1118 640010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1118 314 CDD bHLH_AtBPE_like 154 240 - -
Lcy8g1118 314 MobiDBLite consensus disorder prediction 71 92 - -
Lcy8g1118 314 FunFam Basic helix-loop-helix transcription factor 161 233 - -
Lcy8g1118 314 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983(InterPro)
Lcy8g1118 314 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 91 262 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy8g1118 314 SMART finulus 170 220 IPR011598 GO:0046983(InterPro)
Lcy8g1118 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983(InterPro)
Lcy8g1118 314 Gene3D - 161 235 IPR036638 GO:0046983(InterPro)
Lcy8g1118 314 MobiDBLite consensus disorder prediction 111 152 - -
Lcy8g1118 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 234 IPR036638 GO:0046983(InterPro)
Lcy8g1118 314 MobiDBLite consensus disorder prediction 112 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0378 Lcy-Chr7:3190844 Lcy8g1118 Lcy-Chr8:37412607 3.69E-40 dispersed
Lcy8g1118 Lcy-Chr8:37412607 Lcy9g2004 Lcy-Chr9:44925824 1.18E-38 dispersed
Lcy3g1006 Lcy-Chr3:33992068 Lcy8g1118 Lcy-Chr8:37412607 2.04E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20502 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1118 - - - 0.0