Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1151 ATGGCTACCTACTACTCTAGTTCGAATAACGAAAGGGATGCTACTCCTATCCTCTATCCAAGGGGAGCTTTGCTCGGTTCGTATGAGGAAACGCCAGTTCTTCCCCGGAATATGATGATGCATGTTAATTCTGGTACATACATGGACTCGTTGCCTTCACAGGCGCAAAATGGTTGTGGTCAGATAGCATCGGCTGGAGCAGCAGGAACCACCCAACAGCAGCAAGAGTTTTTATCAAATCTTGGTGGTTCGCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGGACAGGAGTGAAATGCTTGGTACGAACTCGATGCGTGGCCCTACCAATGTCCTTCATGGAGGGCAAAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGGAATCCAGATGCCTTCAATCACATATAGGAATTCGGATATGGGTTTAACTTCATTCTTGAGTCCTAATCCGACGAATTCAGGTGAGGATGGCTGCAGAAATGGCGCTTCTCGAGACGACCAGTTGAGAAGTGGAGAAAACTTGCCGCCTAATTTTCAAGAATTGGCCAAGGGTGACTTATCTCAATACAGCATGTCTAGTATTGCAAGAACTATGCCCAATTCGAAGTACCTTAAGGCAGCACAGCAACTACTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGCCCACATGAGCATGAAACTAGGAGTGCAAAGAATGGTGATGCAGGAACCAAGAATGACAGTTCCTTGCTCACTGCAAGCGGAGTGTCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCGCATGCCGAAAAGCAGGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCACCAGATGCAGATTGTGGTGTCATCATTTGATGTAATAGCCGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAGACTATATCTCGTCATTTTCGGTGCTTACGAGATGCAATAGCTGGTCAAGTTAGAGCTACTCGTAAAAGCCTGGGAGAGCATGAAAATTCTGGAAATGACAAGGGAGTTGGAATCACTCGTCTCCGATATGTGGATCAGCAGTTAAGGCAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGGGCTTGGCTGTTTGAGCACTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTAGCAAGGCAAACAGGCTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCACGTGTGCGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAGATAGGCAGTGCAGAAATGGACTCTATATCATCATCTGAAAATGCTGGCAAAGCAACAAAAGGAGATAACAGGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGCCACCGAAAGATGCAGCGCCGGAGACATTAATGACTTAAAATCTGATCAAGCATCTAATCTTGGAAATTCAGGTTCCACGAGACTAGCTAATTTCCAAAATGGTGCTCATATCGAATCCCAAAACGAGCTGGTAAAGTCGAGGGAGGATCTGAGGCCGAATGTAAATAACTCTAATTTCTTTCCTGATACAATTGTCCACTCTCAGGCAGGGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTTGGGACGGTTAGCGGGGTATCGCTGACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCATACCTATGCCTGCTGGGACACACCATGGTTTTGCAGCCATGAGAGGAGATGATATGTACAACACCGCAGCGTCTTCTCTCGGGGAAACAGTCCATTTTGAATGCGTAAATGCTGGTAATCCGCAACCGAGGTTCGGCCCTTCTCATCTCTATCATGATTTTGTTGTGTAA 2046 45.7 MATYYSSSNNERDATPILYPRGALLGSYEETPVLPRNMMMHVNSGTYMDSLPSQAQNGCGQIASAGAAGTTQQQQEFLSNLGGSQIAEHDFNTWREDRSEMLGTNSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSGIQMPSITYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDDQLRSGENLPPNFQELAKGDLSQYSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSPHEHETRSAKNGDAGTKNDSSLLTASGVSSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSAEMDSISSSENAGKATKGDNRTFEDDKEEDLQQSASSTATERCSAGDINDLKSDQASNLGNSGSTRLANFQNGAHIESQNELVKSREDLRPNVNNSNFFPDTIVHSQAGSDRFMAAAAAYHMSELGRFGTVSGVSLTLGLQHCEGGGIPMPAGTHHGFAAMRGDDMYNTAASSLGETVHFECVNAGNPQPRFGPSHLYHDFVV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37816424 37821433 - Maker00001444 Lcy8g1151 640043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1151 681 FunFam BEL1-like homeodomain protein 4 409 471 - -
Lcy8g1151 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 149 503 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy8g1151 681 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677(InterPro)
Lcy8g1151 681 MobiDBLite consensus disorder prediction 150 167 - -
Lcy8g1151 681 Pfam Associated with HOX 208 355 IPR006563 -
Lcy8g1151 681 SMART HOX_1 406 470 IPR001356 GO:0003677(InterPro)
Lcy8g1151 681 MobiDBLite consensus disorder prediction 480 494 - -
Lcy8g1151 681 MobiDBLite consensus disorder prediction 511 544 - -
Lcy8g1151 681 SMART prehox3 201 356 IPR006563 -
Lcy8g1151 681 MobiDBLite consensus disorder prediction 231 285 - -
Lcy8g1151 681 Coils Coil 288 308 - -
Lcy8g1151 681 MobiDBLite consensus disorder prediction 253 285 - -
Lcy8g1151 681 CDD homeodomain 406 467 IPR001356 GO:0003677(InterPro)
Lcy8g1151 681 MobiDBLite consensus disorder prediction 150 193 - -
Lcy8g1151 681 MobiDBLite consensus disorder prediction 231 252 - -
Lcy8g1151 681 SUPERFAMILY Homeodomain-like 407 473 IPR009057 -
Lcy8g1151 681 Gene3D - 401 480 - -
Lcy8g1151 681 MobiDBLite consensus disorder prediction 478 544 - -
Lcy8g1151 681 MobiDBLite consensus disorder prediction 495 510 - -
Lcy8g1151 681 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1625 Lcy-Chr12:36543485 Lcy8g1151 Lcy-Chr8:37816424 1.96E-71 dispersed
Lcy13g2179 Lcy-Chr13:40728928 Lcy8g1151 Lcy-Chr8:37816424 6.35E-37 dispersed
Lcy3g2052 Lcy-Chr3:47502719 Lcy8g1151 Lcy-Chr8:37816424 1.91E-103 dispersed
Lcy5g0494 Lcy-Chr5:5337893 Lcy8g1151 Lcy-Chr8:37816424 3.53E-84 dispersed
Lcy8g0554 Lcy-Chr8:18942712 Lcy8g1151 Lcy-Chr8:37816424 3.85E-61 dispersed
Lcy8g1151 Lcy-Chr8:37816424 Lcy8g2020 Lcy-Chr8:46432224 6.96E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20505 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1151 - - - 0.0