Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1159 ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTCTGCCCCTCCGACGAAGCCGCCCTCTGCGCCGCCTGTGACCACCACGTCCACCGCGCCAACAAGCTCGCCGGAAAACATGGCCGTTTCTCTCTCCTCCGATCCGCCTCCGCCGCCGATTTGCCGCCGTTGTGCGATATCTGCCAGCTCCGGCGAGCATTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGTGACATTCCAATCCACGGCGCCAACGAACACACCCAGAAGCACAGCCGGTTTCTTCTCACCGGAGTGAAGATCTCGCCGTCGCCGGCGACTTCTTCTTCCTCCTCCACCTCCGTCGCCGGCGAGGAGGAGGCTGCACTTGAAGCTGAAACTGGGTTCTTCAATGCGTGCTCGAGGAAGAGGGCTAAAATGGCGTCGTCTAATGGGTTGCTTCGAGGTCCTTTAATGGAGGATTTACAGCCATCAATCAGTGATAATGGGGTTTCGTTTTCCACTAGCAGCATTTCAGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTTGAGGAATTTCTTGATTCTTCTTCTGCGACTGATGTTTTCTGTAAAGTTTGA 618 53.56 MKIRCDVCDKEEASVFCPSDEAALCAACDHHVHRANKLAGKHGRFSLLRSASAADLPPLCDICQLRRAFLFCREDRAILCRECDIPIHGANEHTQKHSRFLLTGVKISPSPATSSSSSTSVAGEEEAALEAETGFFNACSRKRAKMASSNGLLRGPLMEDLQPSISDNGVSFSTSSISEYLESLPGWCVEEFLDSSSATDVFCKV 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37954716 37955333 + Maker00000247 Lcy8g1159 640051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1159 205 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy8g1159 205 ProSiteProfiles Zinc finger B-box type profile. 59 102 IPR000315 GO:0008270(InterPro)
Lcy8g1159 205 Gene3D Classic Zinc Finger 1 102 - -
Lcy8g1159 205 Pfam B-box zinc finger 58 94 IPR000315 GO:0008270(InterPro)
Lcy8g1159 205 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270(InterPro)
Lcy8g1159 205 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lcy8g1159 205 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy8g1159 205 SMART bboxneu5 55 102 IPR000315 GO:0008270(InterPro)
Lcy8g1159 205 FunFam B-box zinc finger protein 21 1 100 - -
Lcy8g1159 205 CDD Bbox1_BBX-like 59 102 IPR049808 -
Lcy8g1159 205 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 197 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0640 Lcy-Chr6:6095079 Lcy8g1159 Lcy-Chr8:37954716 5.72E-35 dispersed
Lcy13g1934 Lcy-Chr13:38364668 Lcy8g1159 Lcy-Chr8:37954716 5.53E-54 wgd
Lcy3g0981 Lcy-Chr3:33596234 Lcy8g1159 Lcy-Chr8:37954716 6.21E-74 wgd
Lcy8g1159 Lcy-Chr8:37954716 Lcy9g2238 Lcy-Chr9:46932300 2.62E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20506 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1159 - - - 0.0