Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1175 ATGCGAGCCCTTTGCGACGTCTGTAAAACCGCCGCCGCAACCCTCTTCTGCGCCGCCGACGAGGCCGCCCTTTGCCCCGCCTGCGATCACGAGGTTCACATGTGTAACAAACTTGCTAGGAGACATGTTCGTGTTGGACTTGCCGAACCCTGCGATGTTCTGCTGTGTGATAGTATCTTTGTCATTCAAACCATGGATGTAGCTTTCTTTTACTGTGATATAGACACTAGCTCCCTATGCTTGCAATGTGATATGATTGTGCATGTTGGAGGTAAAAGATCCCATGGAAGGTTCCTCCTGTTGAGGCAGAGAATTGAGCTTCCAGAGGATAAACCGAGCGAAGTTCATGAATTTTTTCAGAAACCTGGTAACACAAATGAATTTAGGAGACAAAAAGTTCAGCCTGCTAACCTCACTCTGAGAGAGAATAAACAGTATGAGAATGGCTTGTTAGCTCCAATGGTAGAAAATAGTGATGGTGGTGGCAATATGGACTGCAACTTGATTGACTTGAATGCAGGGCCTCAGAGGATAAATTGTCAAAAACCTGATAATCAGGAACCGCACGCAGAAGTTCTTCGTAGGTACAATCAAGAACCTGAGAGTATGATGCTTGCAAGATCCTTCAAACAAGAACCTGAAAAATGA 648 45.37 MRALCDVCKTAAATLFCAADEAALCPACDHEVHMCNKLARRHVRVGLAEPCDVLLCDSIFVIQTMDVAFFYCDIDTSSLCLQCDMIVHVGGKRSHGRFLLLRQRIELPEDKPSEVHEFFQKPGNTNEFRRQKVQPANLTLRENKQYENGLLAPMVENSDGGGNMDCNLIDLNAGPQRINCQKPDNQEPHAEVLRRYNQEPESMMLARSFKQEPEK 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38136515 38139240 - Maker00000468 Lcy8g1175 640067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1175 215 CDD Bbox1_BBX-like 4 47 IPR049808 -
Lcy8g1175 215 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 137 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy8g1175 215 SMART bboxneu5 61 100 IPR000315 GO:0008270(InterPro)
Lcy8g1175 215 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Lcy8g1175 215 Pfam B-box zinc finger 4 34 IPR000315 GO:0008270(InterPro)
Lcy8g1175 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1175 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1934 Lcy-Chr13:38364668 Lcy8g1175 Lcy-Chr8:38136515 2.06E-17 dispersed
Lcy6g0892 Lcy-Chr6:9103017 Lcy8g1175 Lcy-Chr8:38136515 9.89E-46 dispersed
Lcy8g1175 Lcy-Chr8:38136515 Lcy9g2238 Lcy-Chr9:46932300 4.13E-16 dispersed
Lcy1g0650 Lcy-Chr1:5566956 Lcy8g1175 Lcy-Chr8:38136515 6.10E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1849 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.8 3.5e-82 302.8
Lcy2g0242 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.7 4.3e-56 216.1
Lcy2g0242 . 5 376 C2C2-CO-like Transcription Factor Family AT5G57660 51.2 9.0e-67 251.5
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT3G07650 58.2 1.4e-99 360.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 2.3e-89 326.6
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy3g0981 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.3 9.0e-53 204.9
Lcy8g1159 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 52.6 3.3e-47 186.4
Lcy1g0650 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 3.7e-50 195.3
Lcy6g0892 . 1 200 C2C2-CO-like Transcription Factor Family AT2G21320 51.7 3.6e-45 178.7
Lcy1g0650 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.1 7.5e-49 191.0
Lcy8g1175 . 1 216 C2C2-CO-like Transcription Factor Family AT4G38960 50.5 4.1e-47 185.3
Lcy6g0892 . 1 199 C2C2-CO-like Transcription Factor Family AT4G38960 53.9 5.4e-47 184.9
Lcy3g0981 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.1e-55 211.5
Lcy13g1934 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 7.1e-47 184.9
Lcy8g1159 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 54.1 1.2e-43 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20508 None None None None Lcy TR