Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1175 ATGCGAGCCCTTTGCGACGTCTGTAAAACCGCCGCCGCAACCCTCTTCTGCGCCGCCGACGAGGCCGCCCTTTGCCCCGCCTGCGATCACGAGGTTCACATGTGTAACAAACTTGCTAGGAGACATGTTCGTGTTGGACTTGCCGAACCCTGCGATGTTCTGCTGTGTGATAGTATCTTTGTCATTCAAACCATGGATGTAGCTTTCTTTTACTGTGATATAGACACTAGCTCCCTATGCTTGCAATGTGATATGATTGTGCATGTTGGAGGTAAAAGATCCCATGGAAGGTTCCTCCTGTTGAGGCAGAGAATTGAGCTTCCAGAGGATAAACCGAGCGAAGTTCATGAATTTTTTCAGAAACCTGGTAACACAAATGAATTTAGGAGACAAAAAGTTCAGCCTGCTAACCTCACTCTGAGAGAGAATAAACAGTATGAGAATGGCTTGTTAGCTCCAATGGTAGAAAATAGTGATGGTGGTGGCAATATGGACTGCAACTTGATTGACTTGAATGCAGGGCCTCAGAGGATAAATTGTCAAAAACCTGATAATCAGGAACCGCACGCAGAAGTTCTTCGTAGGTACAATCAAGAACCTGAGAGTATGATGCTTGCAAGATCCTTCAAACAAGAACCTGAAAAATGA 648 45.37 MRALCDVCKTAAATLFCAADEAALCPACDHEVHMCNKLARRHVRVGLAEPCDVLLCDSIFVIQTMDVAFFYCDIDTSSLCLQCDMIVHVGGKRSHGRFLLLRQRIELPEDKPSEVHEFFQKPGNTNEFRRQKVQPANLTLRENKQYENGLLAPMVENSDGGGNMDCNLIDLNAGPQRINCQKPDNQEPHAEVLRRYNQEPESMMLARSFKQEPEK 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38136515 38139240 - Maker00000468 Lcy8g1175 640067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1175 215 CDD Bbox1_BBX-like 4 47 IPR049808 -
Lcy8g1175 215 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 137 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lcy8g1175 215 SMART bboxneu5 61 100 IPR000315 GO:0008270(InterPro)
Lcy8g1175 215 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Lcy8g1175 215 Pfam B-box zinc finger 4 34 IPR000315 GO:0008270(InterPro)
Lcy8g1175 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1934 Lcy-Chr13:38364668 Lcy8g1175 Lcy-Chr8:38136515 2.06E-17 dispersed
Lcy6g0892 Lcy-Chr6:9103017 Lcy8g1175 Lcy-Chr8:38136515 9.89E-46 dispersed
Lcy8g1175 Lcy-Chr8:38136515 Lcy9g2238 Lcy-Chr9:46932300 4.13E-16 dispersed
Lcy1g0650 Lcy-Chr1:5566956 Lcy8g1175 Lcy-Chr8:38136515 6.10E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20508 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1175 - - - 0.0