Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1180 ATGGCCGCCGCCTCCACTCTCAACCTCCCTTCTCTCTCCTCCTCTTCCTCTCTCTCTCATCCCTCTCCCTCTCTTCCAACCCCTCTTTCTCTCTCTAAAACCCTCCCAAAATCCCACTTCCCCCATTCCCTCTCCCTCCCCAATCCCCCCAAGCCCCTCCTCCTCGCCGCCTCCGCCAAATCCCCCATCTCCGCTTTCTTCTCCGACGAAGACGACGACTCTTCCGACGACAAGCCCCGCGAGGAGTGCGGCGTCGTCGGAATCTATGGCGACCCCGAAGCCTCTCGCCTCTGCTATTTGGCCCTCCACGCCCTCCAGCACCGCGGCCAAGAAGGCGCCGGAATCGTCTCCGTCAACGACAACGTCCTCCAGTCCGTCACCGGCGTCGGCCTCGTCTCTGAGGTCTTCAATCAAGCCAAACTCGATCAACTGCCTGGCGATTCTGCTATTGGCCATGTTCGTTACTCCACTGCTGGATCTTCCATGCTCAAGAATGTTCAGCCCTTTGTTGCGGGATATCGATTCGGCTCTGTTGGGGTTGCTCATAATGGTAATTTGGTTAATTATCGTTCTCTTAGAGCTAAGCTTGAAGATACTGGTTCGATTTTCAATACTAGTTCTGATACTGAGGTTGTTCTTCACCTGATTGCCATTTCTAAACATAGACCTTTCTTGTTAAGGATTGTGGATGCTTGTGAACAGCTTGAAGGGGCTTATTCTATGGTTTTTATTACTGAGGATAAGTTGGTTGCTGTTCGTGATCCTTTTGGTTTTAGGCCTTTGGTTATGGGTAGGAGGAGTAATGGGGCTGTTGTGTTTGCTTCTGAAACTTGTGCTCTTGATTTAATTGAGGCCACATATGAGAGAGAAGTGTTTCCTGGTGAAGTTTTGGTGGTTGATAAAAATGGGATTCAATCCCTCTGTTTAATGGCTCATCCTCAGCCAAAATCTTGCATATTCGAACACATATACTTTGCTCTTCCGAACTCGGTTGTTTTCGGGCGTTCTGTCTACGAATCCCGCCGAGCATTTGGGGAGATACTCGCCACCGAAGCCCCTGTCGATTGTGATGTTGTGATTGCTGTCCCGGATTCAGGAGTAGTGGCTGCTCTTGGCTATGCAGCCAAAGCTGGGGTGGCTTTTCAACAGGGCCTCATAAGGTCTCACTATGTGGGGAGGACATTCATCGAGCCATCGCAGAAGATTCGCGACTTCGGCGTGAAGCTGAAGCTGTCGCCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTGGTGGTTGTGGATGACTCAATTGTTAGAGGCACCACATCTTCAAAGATTGTGAGGCTGATAAAGGAAGCAGGGGCAAAAGAAGTGCATATGAGGATAGCCAGCCCTCCAATTATAGGGTCATGCTATTATGGAGTGGACACACCAAGCTCTGAAGAACTGATCTCCAACAGGCTGAGTGTTGAGGAAATAAGAGAGTTTATAGGGTCTGATTCACTTGCTTTTCTGCCATTTGATAGCCTGAAGAAGCTTTTGGGCAATGAATCTCCAAACTATTGCTATGCTTGCTTTTCAGGGAACTATCCAGTTGAGCCTAGAGAAATAAAAGTGAAAAGGGTGGGAGATTTTGTTGATGATGGGTTGAATGGAAGCTTGGAATCCATTGATGGAGGATGGGTTCAAGCTCAAGCAAGCAGAAACCAAAACCTTGATAATAATCTCACAGTGGAGAAAGTTGGGGGCCTCTGA 1734 49.19 MAAASTLNLPSLSSSSSLSHPSPSLPTPLSLSKTLPKSHFPHSLSLPNPPKPLLLAASAKSPISAFFSDEDDDSSDDKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVSVNDNVLQSVTGVGLVSEVFNQAKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRAKLEDTGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRLSVEEIREFIGSDSLAFLPFDSLKKLLGNESPNYCYACFSGNYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVQAQASRNQNLDNNLTVEKVGGL 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38235021 38236754 - Maker00000925 Lcy8g1180 640072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1180 577 CDD PRTases_typeI 345 456 IPR000836 -
Lcy8g1180 577 Gene3D - 342 506 IPR029057 -
Lcy8g1180 577 Pfam Phosphoribosyl transferase domain 340 452 IPR000836 -
Lcy8g1180 577 SUPERFAMILY PRTase-like 318 529 IPR029057 -
Lcy8g1180 577 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 83 524 IPR029055 -
Lcy8g1180 577 MobiDBLite consensus disorder prediction 1 41 - -
Lcy8g1180 577 Hamap Amidophosphoribosyltransferase [purF]. 82 523 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Lcy8g1180 577 MobiDBLite consensus disorder prediction 1 46 - -
Lcy8g1180 577 NCBIfam amidophosphoribosyltransferase 83 524 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Lcy8g1180 577 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 83 306 IPR029055 -
Lcy8g1180 577 CDD GPATase_N 83 333 IPR035584 -
Lcy8g1180 577 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 83 302 IPR017932 -
Lcy8g1180 577 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 77 531 - GO:0004044(PANTHER)|GO:0005737(PANTHER)|GO:0006164(PANTHER)
Lcy8g1180 577 Pfam Glutamine amidotransferase domain 163 280 IPR017932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1180 K00764 - - csv:101203840 964.526
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy8g1180 . 69 556 PRT Gene Family AT2G16570 84.1 1.2e-241 833.2
Lcy8g1180 . 61 556 PRT Gene Family AT4G34740 83.5 1.4e-242 836.3
Lcy8g1180 . 34 529 PRT Gene Family AT4G38880 70.6 4.8e-197 684.9
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy12g1805 . 6 104 PRT Gene Family AT4G22570 80.8 1.2e-43 172.9
Lcy6g2077 . 1 97 PRT Gene Family AT4G22570 81.6 1.5e-41 166.0
Lcy13g2129 . 102 194 PRT Gene Family AT4G22570 79.6 4.0e-39 157.9
Lcy13g1798 . 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Lcy12g1805 . 1 96 PRT Gene Family AT4G12440 82.3 2.6e-40 161.8
Lcy6g2077 . 1 96 PRT Gene Family AT4G12440 80.2 1.8e-38 155.6
Lcy13g2129 . 98 193 PRT Gene Family AT4G12440 78.1 3.5e-37 151.4
Lcy13g1798 . 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy10g1606 . 1 188 PRT Gene Family AT1G71750 65.8 1.1e-69 260.4
Lcy12g0160 . 19 482 PRT Gene Family AT1G55810 74.6 9.3e-202 700.3
Lcy12g0160 . 80 482 PRT Gene Family AT3G27440 75.7 6.4e-181 630.9
Lcy12g0160 . 1 483 PRT Gene Family AT3G27190 86.4 1.3e-246 849.4
Lcy1g1484 . 12 275 PRT Gene Family AT3G53900 65.9 4.1e-97 352.1
Lcy12g0160 . 10 482 PRT Gene Family AT4G26510 76.1 1.9e-213 739.2
Lcy12g0160 . 1 482 PRT Gene Family AT5G40870 86.3 1.5e-245 845.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40