Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1182 ATGAAACAACCCCGCAAACGCACTTCGCCAAGTGCCATCGTTCTCTTTCAATCACGCTCTCTTCCTGAAACCTTCACCGGAGAAAAACAAAAACCAAAAACAAGAATGTCACCGGAGACGTCGAAAAGCAACAAGATCCGCCGCATTGTCCGGCTCCGCCAAATGCTACAACACTGGCGCAAGAAGGCACGCGCGGCCTCCTCCAGAGCACCGCCGTCCGACGTCCCCGCAGGTCACGTCGCCGTCTGCGTCGGCAGCGGCTGCCGCCGATTCATCGTCCGCGCGACCTTCCTGAACCATCCGATCTTCCGGAAGCTGCTATCGCAGGCCGAAGAAGAATACGGCTTCGCTACGCGAGGTCCTCTGGCGCTTCCGTGCGACGAATCGGTCTTCGAGGAGGTCCTCCGAGTCGTCGCTCGCTCCGAGTTGAGTAACTCCTCGCGAAATCCGAATCTCAAGGATTTGCAGAGGCGATGCGATGAAGATGTCAGAAAGAACCTCGAGTTCTTAGGCGAATCGAGACCTTTACTGTATGGATTAGCCGATAATAAATCCGTCTGTTGA 564 55.67 MKQPRKRTSPSAIVLFQSRSLPETFTGEKQKPKTRMSPETSKSNKIRRIVRLRQMLQHWRKKARAASSRAPPSDVPAGHVAVCVGSGCRRFIVRATFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVLRVVARSELSNSSRNPNLKDLQRRCDEDVRKNLEFLGESRPLLYGLADNKSVC 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38272764 38273327 + Maker00001451 Lcy8g1182 640074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1182 187 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 52 138 IPR003676 GO:0009733(InterPro)
Lcy8g1182 187 MobiDBLite consensus disorder prediction 10 25 - -
Lcy8g1182 187 Pfam Auxin responsive protein 51 137 IPR003676 GO:0009733(InterPro)
Lcy8g1182 187 MobiDBLite consensus disorder prediction 26 43 - -
Lcy8g1182 187 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0944 Lcy-Chr3:32870227 Lcy8g1182 Lcy-Chr8:38272764 1.57E-61 dispersed
Lcy9g1752 Lcy-Chr9:42724008 Lcy8g1182 Lcy-Chr8:38272764 1.63E-17 transposed
Lcy3g2326 Lcy-Chr3:50133264 Lcy8g1182 Lcy-Chr8:38272764 1.25E-21 transposed
Lcy8g1182 Lcy-Chr8:38272764 Lcy9g2251 Lcy-Chr9:47027801 8.32E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1182 K14488 - csv:101222974 260.766