Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1211 | ATGGACCAACTGATTCGACGCGACGCTCTCATTCAGAATCCAGCCGCGCCCTCCATTGTACCATGCATTGAGCTTTCAGGGCACCCAAATCGTTCTCAATCCAGTTCCAGCTTACTGGCTATCATATCAATATATGTTTTCCGCTGTCAAAGGTCTGAAGGGGAGTTGAAGGATTCTGCAGCTGCTAGAAGAGTTCAGAAGGCTGACAGAGAGAAACTAAGAAGGGACCGATTGAATGAACATTTCGTCGAGCTGGGAAATATTTTAGATCCTGATAGGCCTAAAAATGACAAAGCAACCATTTTAATGGACACAATTCAATTGCTGAAGGATTTGACATCCCAAGTTAACAAACTGAAAACTGAGTATGCAACATTAACAGAAGAATCACGTGAGCTATCCCAGGAAAAGAATGATCTGAGAGAAGAGAAGGCGTTGCTCAAATCTGATATTGAGAATCTTAATGCCCAGTATCAGCAAAGACTCAGGGCTACATACCCTTGGGCTGCCATGGATAACTCGGTTGTCATGGCCCCTGCTCCTTTCCCATTTCCAGTGCCTATGCAAATGCCTCCAGGGCCATTTCCCCTGCATCCATCCTTGCAGCCTTATACGTTCTACGGAAATCAGAATCCTGTGGTAATTTCAAACCCTTGTTCCACCTTTGTCCCATACATAGCTCCTAATTCCTTGATTGAGCAGCAATCCTCCCGAAATGCACCACCTTACATTCATCCAGGTTATCAGTCTCATAACTTGAGCAAGCAAGAAACAGGGAGCAACTCCTCAAGTGAAAGCAAGATTGAGAAAAGTGTAGATTCTAATGAAGTTGCAACTTACCTGGAGTTGAAGACTCCTGGATCTTCCACAGATCAGGATACCTCGTTTGAACAAACAAACAGTAAGAACAGGAAGGAACATAATCCATCTGAAGAGAGTTCTTCAAGTAGACAAAATATATCAGAAGAGAGTTCTTCAAGTAGATGTTCTTTATCTCGTAGTTTGGAGGCCAATTCGCTTAGTAGCACACTAAATGGACGGAAATCTACTGATATATGTGGAAACACATAA | 1071 | 43.04 | MDQLIRRDALIQNPAAPSIVPCIELSGHPNRSQSSSSLLAIISIYVFRCQRSEGELKDSAAARRVQKADREKLRRDRLNEHFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESRELSQEKNDLREEKALLKSDIENLNAQYQQRLRATYPWAAMDNSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFYGNQNPVVISNPCSTFVPYIAPNSLIEQQSSRNAPPYIHPGYQSHNLSKQETGSNSSSESKIEKSVDSNEVATYLELKTPGSSTDQDTSFEQTNSKNRKEHNPSEESSSSRQNISEESSSSRCSLSRSLEANSLSSTLNGRKSTDICGNT | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 38484704 | 38489362 | - | Maker00000615 | Lcy8g1211 | 640103 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1211 | 356 | MobiDBLite | consensus disorder prediction | 281 | 297 | - | - | |
Lcy8g1211 | 356 | MobiDBLite | consensus disorder prediction | 237 | 268 | - | - | |
Lcy8g1211 | 356 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 61 | 131 | IPR036638 | GO:0046983(InterPro) | |
Lcy8g1211 | 356 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 62 | 112 | IPR011598 | GO:0046983(InterPro) | |
Lcy8g1211 | 356 | Gene3D | - | 60 | 165 | IPR036638 | GO:0046983(InterPro) | |
Lcy8g1211 | 356 | MobiDBLite | consensus disorder prediction | 237 | 356 | - | - | |
Lcy8g1211 | 356 | Pfam | Helix-loop-helix DNA-binding domain | 63 | 112 | IPR011598 | GO:0046983(InterPro) | |
Lcy8g1211 | 356 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 49 | 349 | IPR044579 | GO:0003700(InterPro)|GO:0006879(InterPro) | |
Lcy8g1211 | 356 | Coils | Coil | 102 | 157 | - | - | |
Lcy8g1211 | 356 | CDD | bHLH_AtILR3_like | 67 | 141 | - | - | |
Lcy8g1211 | 356 | MobiDBLite | consensus disorder prediction | 313 | 356 | - | - | |
Lcy8g1211 | 356 | MobiDBLite | consensus disorder prediction | 298 | 312 | - | - | |
Lcy8g1211 | 356 | SMART | finulus | 68 | 118 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy8g1211 | Lcy-Chr8:38484704 | Lcy9g1226 | Lcy-Chr9:36715435 | 3.40E-12 | dispersed | |
Lcy2g0582 | Lcy-Chr2:4981306 | Lcy8g1211 | Lcy-Chr8:38484704 | 7.07E-09 | transposed | |
Lcy1g0629 | Lcy-Chr1:5400616 | Lcy8g1211 | Lcy-Chr8:38484704 | 1.23E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20509 | None | None | None | None | Lcy | TF |
Pathway information
