Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1211 ATGGACCAACTGATTCGACGCGACGCTCTCATTCAGAATCCAGCCGCGCCCTCCATTGTACCATGCATTGAGCTTTCAGGGCACCCAAATCGTTCTCAATCCAGTTCCAGCTTACTGGCTATCATATCAATATATGTTTTCCGCTGTCAAAGGTCTGAAGGGGAGTTGAAGGATTCTGCAGCTGCTAGAAGAGTTCAGAAGGCTGACAGAGAGAAACTAAGAAGGGACCGATTGAATGAACATTTCGTCGAGCTGGGAAATATTTTAGATCCTGATAGGCCTAAAAATGACAAAGCAACCATTTTAATGGACACAATTCAATTGCTGAAGGATTTGACATCCCAAGTTAACAAACTGAAAACTGAGTATGCAACATTAACAGAAGAATCACGTGAGCTATCCCAGGAAAAGAATGATCTGAGAGAAGAGAAGGCGTTGCTCAAATCTGATATTGAGAATCTTAATGCCCAGTATCAGCAAAGACTCAGGGCTACATACCCTTGGGCTGCCATGGATAACTCGGTTGTCATGGCCCCTGCTCCTTTCCCATTTCCAGTGCCTATGCAAATGCCTCCAGGGCCATTTCCCCTGCATCCATCCTTGCAGCCTTATACGTTCTACGGAAATCAGAATCCTGTGGTAATTTCAAACCCTTGTTCCACCTTTGTCCCATACATAGCTCCTAATTCCTTGATTGAGCAGCAATCCTCCCGAAATGCACCACCTTACATTCATCCAGGTTATCAGTCTCATAACTTGAGCAAGCAAGAAACAGGGAGCAACTCCTCAAGTGAAAGCAAGATTGAGAAAAGTGTAGATTCTAATGAAGTTGCAACTTACCTGGAGTTGAAGACTCCTGGATCTTCCACAGATCAGGATACCTCGTTTGAACAAACAAACAGTAAGAACAGGAAGGAACATAATCCATCTGAAGAGAGTTCTTCAAGTAGACAAAATATATCAGAAGAGAGTTCTTCAAGTAGATGTTCTTTATCTCGTAGTTTGGAGGCCAATTCGCTTAGTAGCACACTAAATGGACGGAAATCTACTGATATATGTGGAAACACATAA 1071 43.04 MDQLIRRDALIQNPAAPSIVPCIELSGHPNRSQSSSSLLAIISIYVFRCQRSEGELKDSAAARRVQKADREKLRRDRLNEHFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESRELSQEKNDLREEKALLKSDIENLNAQYQQRLRATYPWAAMDNSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFYGNQNPVVISNPCSTFVPYIAPNSLIEQQSSRNAPPYIHPGYQSHNLSKQETGSNSSSESKIEKSVDSNEVATYLELKTPGSSTDQDTSFEQTNSKNRKEHNPSEESSSSRQNISEESSSSRCSLSRSLEANSLSSTLNGRKSTDICGNT 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38484704 38489362 - Maker00000615 Lcy8g1211 640103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1211 356 MobiDBLite consensus disorder prediction 281 297 - -
Lcy8g1211 356 MobiDBLite consensus disorder prediction 237 268 - -
Lcy8g1211 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 131 IPR036638 GO:0046983(InterPro)
Lcy8g1211 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 112 IPR011598 GO:0046983(InterPro)
Lcy8g1211 356 Gene3D - 60 165 IPR036638 GO:0046983(InterPro)
Lcy8g1211 356 MobiDBLite consensus disorder prediction 237 356 - -
Lcy8g1211 356 Pfam Helix-loop-helix DNA-binding domain 63 112 IPR011598 GO:0046983(InterPro)
Lcy8g1211 356 PANTHER TRANSCRIPTION FACTOR BHLH121 49 349 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Lcy8g1211 356 Coils Coil 102 157 - -
Lcy8g1211 356 CDD bHLH_AtILR3_like 67 141 - -
Lcy8g1211 356 MobiDBLite consensus disorder prediction 313 356 - -
Lcy8g1211 356 MobiDBLite consensus disorder prediction 298 312 - -
Lcy8g1211 356 SMART finulus 68 118 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1211 Lcy-Chr8:38484704 Lcy9g1226 Lcy-Chr9:36715435 3.40E-12 dispersed
Lcy2g0582 Lcy-Chr2:4981306 Lcy8g1211 Lcy-Chr8:38484704 7.07E-09 transposed
Lcy1g0629 Lcy-Chr1:5400616 Lcy8g1211 Lcy-Chr8:38484704 1.23E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20509 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1211 - - - 0.0