Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1219 ATGGCGGCAACTATGTCACCGTGGGGCAAGCCCGGAGCTTGGGCTTTGGATGCGGAGGAGCACGAGGCCGAGCTTCTCAAGGACCAGCAGGACCAATCCCGCCAGCAATCGGAACCCAGTGCTGATTTTCCGTCCCTCGCCGCCGCTGCCGCCACCAAGCCCAAGAAGAAGAAAGGTCAGCCCATTACCCTCTCGGAGTTTCAGAGCTATGGCGGTCCTAAGCCCTCGGCTCAATCCAGTGAGCCAAAGGGTCTTACGACCGAAGATCTCATGATGCTTCCGACGGGTCCGCGTCAGCGAACGGCGGAGGAGCTGGACCGCAACCGGCTCGGAGGAGGTTTCAAGAGTTGGGGTCAGAATAGTTTGTACGACAAGGGGAATCGGTATTCTAATGGTGAAGATTCGTCGAATTCTCGACGGGGTTCTAGGGTTTTTGATGACTCGAGGAGGAGTAACGATGGATCCAATAGGGAATTCAGAAGGGAACCGTTGCCCTCTAGGGCTGATGAGATCGATGATTGGGGCGCCGGGAAGAAGCCTATGATGGGTAATGGGTTTGAGAGGAGAGAGCGAGGAGGAGGAGGTTTTTTCGATTCGCATTCTTCCAAAGCGGATGAATCGGATAGTTGGGTATCAAATAAGAGCTTTTCTCCTTCTGAGGGTCGGAGATCAGGCGGTATAGGTGGCGGGTTTGAGAGAGAGCGAAGAGGAGGATTTCCCTCGAACGGTGGTGGCGCCGATTCGGACAATTGGGGCAGAAAATCAGAAGGGGCTAGAGGTGGAATTGGCGAGAACGGTGGTGGGGCTGATTCGGATAATTGGGGAAAAAAATCTGAAGGGGTTAGAGGTGGAATTGGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATCCCTTTGAACAATGGGAATACGGAGGCTTCTGGTGCGGCAGTAAAGCCAAAGAGTTCCAATCCTTTTGGAAATGCAAGACCGAGGGAACAGGTATTGGCTGAGAAGGGGCAGGACTGGAAAAAGATTGATGAGCAGCTCGAGTCAATGAAAATTAAGGATACAGTTGAGAGGGCTGAGAGATCTAGTGGGGCTTCTTTTGAGAGAAAAGGCTTTGGAGGTCGAAGTGGTCGGTCTCCCGAAGATCGGTCAGGGAGGAGTTGGAGGAAGCCAGAGGCTGTGGAGTCTCGTCCCCAAAGGTTTGCGTTCGATATACTTAAAACTCTTGCTGCTTTTGATGCCAAAGTCGGTGGTACATTTGATTATAGTTGCTCCCTTGTACTTGTTTGTGCCTTGTGGTGCTTTATACATATTGGTTGTCCTTTGGAGAACTTGTACTTGTTTGTGCCTTGTGGTGCTTTATACATATTGATTGTCCTTTGGAGAAATCGTTTCATTTGA 1392 51.44 MAATMSPWGKPGAWALDAEEHEAELLKDQQDQSRQQSEPSADFPSLAAAAATKPKKKKGQPITLSEFQSYGGPKPSAQSSEPKGLTTEDLMMLPTGPRQRTAEELDRNRLGGGFKSWGQNSLYDKGNRYSNGEDSSNSRRGSRVFDDSRRSNDGSNREFRREPLPSRADEIDDWGAGKKPMMGNGFERRERGGGGFFDSHSSKADESDSWVSNKSFSPSEGRRSGGIGGGFERERRGGFPSNGGGADSDNWGRKSEGARGGIGENGGGADSDNWGKKSEGVRGGIGERPRLNLQPRSIPLNNGNTEASGAAVKPKSSNPFGNARPREQVLAEKGQDWKKIDEQLESMKIKDTVERAERSSGASFERKGFGGRSGRSPEDRSGRSWRKPEAVESRPQRFAFDILKTLAAFDAKVGGTFDYSCSLVLVCALWCFIHIGCPLENLYLFVPCGALYILIVLWRNRFI 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38585882 38587273 + Maker00001149 Lcy8g1219 640111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1219 463 MobiDBLite consensus disorder prediction 1 325 - -
Lcy8g1219 463 MobiDBLite consensus disorder prediction 62 85 - -
Lcy8g1219 463 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 393 IPR010433 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)
Lcy8g1219 463 MobiDBLite consensus disorder prediction 371 390 - -
Lcy8g1219 463 MobiDBLite consensus disorder prediction 15 31 - -
Lcy8g1219 463 MobiDBLite consensus disorder prediction 183 207 - -
Lcy8g1219 463 Coils Coil 16 36 - -
Lcy8g1219 463 Pfam Plant specific eukaryotic initiation factor 4B 215 367 IPR010433 GO:0003743(InterPro)
Lcy8g1219 463 Pfam Plant specific eukaryotic initiation factor 4B 7 232 IPR010433 GO:0003743(InterPro)
Lcy8g1219 463 MobiDBLite consensus disorder prediction 295 312 - -
Lcy8g1219 463 MobiDBLite consensus disorder prediction 120 138 - -
Lcy8g1219 463 MobiDBLite consensus disorder prediction 351 390 - -
Lcy8g1219 463 MobiDBLite consensus disorder prediction 139 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1744 Lcy-Chr13:36377651 Lcy8g1219 Lcy-Chr8:38585882 3.74E-31 dispersed
Lcy5g1973 Lcy-Chr5:42698861 Lcy8g1219 Lcy-Chr8:38585882 8.47E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1219 K03258 - csv:101214573 645.58