Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1240 ATGGATCGTCCACTCCTTCTCGCCACTGTTTTCACCCTCCTCCTGCTCCCAGATGTTCAATCCACGTCTTTTAAGTTAGTCAACAAGTGTCGGACCACGATTTGGCCCGGTCTGTTATCCGGCGCCGGCACCGCCCAGCTTCCGACCACCGGCTTCGCCCTCCGCAGCGGCAAATCCAAGATCATTCCGCTACCCAAATCTTGGTCGGGTCGGTTATGGGGTCGGACCCTTTGCGGCTTAGATTCCGACGGGAAGTTTTCTTGCCTCACCGGCGACTGTGGGTCGGGTAAAGTGGAGTGCGCCGGGGGCGGTGCTAAGCCGCCGGCGACCTTGGCGGAGTTCACTCTCAACGGCGCCGACGGGCTTGATTTTTACGACGTCAGCTTGGTGGACGGTTACAACCTTCCGATGCTCGTAGTGGCCAAGGGTGGGACGAGAGGCGGTTGCGCCGCCACGGGGTGTTTGGTGGATTTGAACGGCGCGTGTCCGTCAGAGCTCCGGGTAGCGAGTGGTGGTGGTGGTGGGAGGAGCGTGGCTTGTAGAAGCGCGTGTGAGGCTTTCAATGCTCCGCAATTTTGTTGTAGTGAAGCGTTCTCTACACCTGACACGTGTCGTCCTTCGGTATATTCGTTGTTCTTTAAACATGCTTGCCCACGCTCGTATAGCTACGCGTATGATGACAAAACCAGCACTTTCACGTGTGCCTCCGCCGATTACCTTATCATATTTTGTCCACTACCTCACACCAGTCGATGTGTGCAACTTGGATGTCTAACCTTGGGAATTAAATTGCAGTCAGAAAGTGTTGAGTGCAAAGAAAGACGGGGCGGTGCTACCGCTCGTGAACAAGACGATGATGTACCTGAGAAGTCGAAGGGCGAGCGGCGTTCTATCTGCAGGCAGATAGTGTTGAAATGA 918 55.45 MDRPLLLATVFTLLLLPDVQSTSFKLVNKCRTTIWPGLLSGAGTAQLPTTGFALRSGKSKIIPLPKSWSGRLWGRTLCGLDSDGKFSCLTGDCGSGKVECAGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLVVAKGGTRGGCAATGCLVDLNGACPSELRVASGGGGGRSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSLFFKHACPRSYSYAYDDKTSTFTCASADYLIIFCPLPHTSRCVQLGCLTLGIKLQSESVECKERRGGATAREQDDDVPEKSKGERRSICRQIVLK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38935845 38938066 + Maker00000908 Lcy8g1240 640132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1240 305 CDD TLP-PA 23 244 - -
Lcy8g1240 305 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
Lcy8g1240 305 MobiDBLite consensus disorder prediction 275 298 - -
Lcy8g1240 305 FunFam THAUMATIN-LIKE PROTEIN 1 22 245 - -
Lcy8g1240 305 ProSiteProfiles Thaumatin family profile. 21 245 IPR001938 -
Lcy8g1240 305 PANTHER OS03G0233200 PROTEIN 10 245 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Lcy8g1240 305 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Lcy8g1240 305 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Lcy8g1240 305 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Lcy8g1240 305 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Lcy8g1240 305 SMART tha2 24 245 IPR001938 -
Lcy8g1240 305 SUPERFAMILY Osmotin, thaumatin-like protein 23 245 IPR037176 -
Lcy8g1240 305 Gene3D Thaumatin 22 245 IPR037176 -
Lcy8g1240 305 Pfam Thaumatin family 28 245 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1451 Lcy-Chr4:36189421 Lcy8g1240 Lcy-Chr8:38935845 8.19E-07 dispersed
Lcy8g1240 Lcy-Chr8:38935845 Lcy9g2273 Lcy-Chr9:47171367 3.99E-120 dispersed
Lcy8g1240 Lcy-Chr8:38935845 Lcy8g1242 Lcy-Chr8:38948808 1.11E-95 proximal
Lcy1g0624 Lcy-Chr1:5344388 Lcy8g1240 Lcy-Chr8:38935845 4.70E-98 wgd
Lcy6g2309 Lcy-Chr6:47837388 Lcy8g1240 Lcy-Chr8:38935845 8.85E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1240 - - - 0.0