Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1243 ATGGGTTCTTTGAAGCTGCCTCCTTCGACGACGGTGCTGAAATGGCTGGGATTTGTCTCCGCCGTCTGGGTTCAGGCCATTTCCGGCAACAACTACACCTTTTCCAACTACTCCGACGCCCTCAAATCTCTGATGAACCTGACCCAACTTCAGCTCAACAATCTCTCCGTCGCAAAAGACGTCGGAAAAGCCTTTGGCCTTCTCGCCGGAATCGCCTCTGATCGCTTCCCCACTTGGGTCATTTTGCTTATTGGCTCTCTTGAAGGCCTTCTTGGCTATGGCGTCCAGTGGCTCGTCGTTAGCCAGAGAGTTAGCCCTCTTCCTTACTGGCAGATGAGCATCTTTCTGTGTATGGGCGGCAACAGCACGACGTGGATGAACACGGCGGTGCTGGTGACCTGCATCAGAAACTTCCGGAAGAATCGTGGCCCAGTTTCCGGCATTCTCAAAGGCTACGTCGGCCTCAGCACCGCCATTTTCACCGATCTCTGCACTGCTCTGTTTTCCGGCGACCCATCGTCCTTCCTCGTCATGCTCGCCGTCGTCCCCTTCGCCGTCTGCCTCTTCGCCATGTTCTTCCTCCGCGAGATCCCACCTCCGGAAACCGCCAACGCCGCCGCCGCCGACGCCCAAGAAGAGTCAAACTTCTTCGCCGTCTTCAACGCCCTCGCCGTCGTCGTCGCCGTCTATCTCTTGTGCTTCGACTTCATCAAAAACTCCGGCAGAGTCGTCTCCCAATTGTTCTCCGTCGGGCTGTTGATTCTCCTCGGATCCCCTTTGGTTATTCCGATTTACTCGTTTTTGAAGAGCCGGCAGTCGAATCGGGTCCGGTCGGATTTGGAGGCCCGGATTGAGGAGCCGCTGCTGAAGGAAGAAGCGGCGGGTGCAGAGAGTTCGGCGGTGGCGCCGGTGAAGGAGGAGGAAATTGAGGAGGAGAGGAGAGAGCCGGTGATCGGAGAAGAACATACGATATTTGAGGCGCTGAAAACGGTTGATTTCTGGGTTTTGTTCGTGTCGTTTCTGTGTGGAGTTGGAACTGGAATGGCGGTGATGAACAATATGGGTCAGATCGGATTGGCTCTTGGTTACGCCGATGTATCCATGTTCGTTTCTCTGACGAGTATTTGGGGCTTCTTCGGTCGGATCCTTTCCGGCACACTTTCCGAGCATTTTCTCAAAAAAGCAGGCACACCAAGGCCTCTATGGAACGCCGCATCTCAAATTCTAATGGCCGTTGGGTATGTTTTGATGGCAATAGCAATGCCAGGGTCCCTCTACATCGGCTCGGTCGTCGTCGGAATCTGCTACGGCGTACGTCTCTCCGTCACCGTCCCCACCGCCTCCGAGCTCTTCGGCCTCAAATACTACGGTCTCATCTACAACATTCTCATCCTCAATCTCCCCATCGGCTCCTTCCTCTTCTCGGGCCTCCTCGCGGGGTTCCTCTACGACAGGGAGGCTACCCCGACCGAAGGCGGCGGTAACACCTGCATCGGGGGCCATTGCTACAGAATCGTGTTCCTGGTGATGGCCGCAGCTTGTGCCATTGGCTTCGTTTCGGACCTTTGGTTGGCCTTTAGGACCAAGGAGCTTTATTCGAAGCTGAAAACCAACAAGAAATCAAAGAAGGGAAACAGCAACAGCAACTCGTAG 1653 55.05 MGSLKLPPSTTVLKWLGFVSAVWVQAISGNNYTFSNYSDALKSLMNLTQLQLNNLSVAKDVGKAFGLLAGIASDRFPTWVILLIGSLEGLLGYGVQWLVVSQRVSPLPYWQMSIFLCMGGNSTTWMNTAVLVTCIRNFRKNRGPVSGILKGYVGLSTAIFTDLCTALFSGDPSSFLVMLAVVPFAVCLFAMFFLREIPPPETANAAAADAQEESNFFAVFNALAVVVAVYLLCFDFIKNSGRVVSQLFSVGLLILLGSPLVIPIYSFLKSRQSNRVRSDLEARIEEPLLKEEAAGAESSAVAPVKEEEIEEERREPVIGEEHTIFEALKTVDFWVLFVSFLCGVGTGMAVMNNMGQIGLALGYADVSMFVSLTSIWGFFGRILSGTLSEHFLKKAGTPRPLWNAASQILMAVGYVLMAIAMPGSLYIGSVVVGICYGVRLSVTVPTASELFGLKYYGLIYNILILNLPIGSFLFSGLLAGFLYDREATPTEGGGNTCIGGHCYRIVFLVMAAACAIGFVSDLWLAFRTKELYSKLKTNKKSKKGNSNSNS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38966669 38969964 - Maker00000747 Lcy8g1243 640135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1243 550 Gene3D MFS general substrate transporter like domains 329 548 IPR036259 -
Lcy8g1243 550 Pfam Nodulin-like 14 264 IPR010658 -
Lcy8g1243 550 CDD MFS_Mch1p_like 13 517 - -
Lcy8g1243 550 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 535 - GO:0016020(PANTHER)
Lcy8g1243 550 SUPERFAMILY MFS general substrate transporter 14 529 IPR036259 -
Lcy8g1243 550 Gene3D MFS general substrate transporter like domains 10 207 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0624 Lcy-Chr7:5703037 Lcy8g1243 Lcy-Chr8:38966669 2.31E-82 dispersed
Lcy7g0626 Lcy-Chr7:5718486 Lcy8g1243 Lcy-Chr8:38966669 5.79E-86 dispersed
Lcy10g2287 Lcy-Chr10:46524240 Lcy8g1243 Lcy-Chr8:38966669 1.66E-94 transposed
Lcy11g0032 Lcy-Chr11:326128 Lcy8g1243 Lcy-Chr8:38966669 2.27E-74 transposed
Lcy12g0548 Lcy-Chr12:6673485 Lcy8g1243 Lcy-Chr8:38966669 4.03E-110 transposed
Lcy13g0549 Lcy-Chr13:6950347 Lcy8g1243 Lcy-Chr8:38966669 1.40E-79 transposed
Lcy6g0758 Lcy-Chr6:7466468 Lcy8g1243 Lcy-Chr8:38966669 3.71E-58 transposed
Lcy3g0912 Lcy-Chr3:32321316 Lcy8g1243 Lcy-Chr8:38966669 7.93E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1243 - - - 0.0