Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1248 ATGGCCGCTTTTCTCGCCACTTCTCTTTCTCCTCTCTTCTTCTTCTTCCTTCTTTTGTTGATTCATGGCTCTGCAGTTTCTGCTGATTCGCCATTGAAGACCTTCATCTTCCGTGTGGATCGTTTCTCTAAGCCCTCTGTTTTTCCCACCCATTACCACTGGTACACTTCCGAGTTCGCCGAATCCCCCCAAATTCTCCATGTTTACGACACTGTCTTCCATGGATTCTCTGCAACTCTCACTCAAGAGCAGGTCGATTCCATCGGAAAACACCCTTCTGTGCTCGCCGTCTTTGAGGACCGTCGCCGTCAGCTTCACACCACGCGTTCCCCTCAGTTTCTCGGCCTTCGGAACCAGCGTGGTCTCTGGTCCGATTCCGATTACGGGTCGGATGTAATCATCGGGGTTTTCGACACTGGGATTTCCCCCGAACGGAGAAGCTTCTCCGATGTGAACTTGGGGCCGATTCCTCGCCGGTGGAAGGGGGTTTGTCAGACTGGAACTAAGTTCACTGCCAAAAACTGTAACAGGAAGATCGTCGGAGCGAGGTTTTTCTCTAAAGGTCACGAGGCTGGGTCCAACGCTGCCGGTCCGATTATTGGGATCAACGACACGATTGAGTACCGATCTCCGAGGGACGCCGACGGCCATGGGACTCACACGGCCTCGACGGCGGCTGGGCGTCACGCGTTTCAGGCGAGTTTGGAGGGTTATGCTTCTGGAATCGCAAAGGGCGTGGCTCCTAAGGCGCGTTTGGCGGTTTACAAAGTTTGCTGGAAAAATTCGGGTTGTTTCGATTCCGATATTCTCGCGGCGTTTGATGCTGCGGTTAACGACGGCGTGGATGTCATTTCGATCTCGATTGGCGGCGGCGATGGTGTTTCCTCGCCGTATTATCTCGACCCAATTGCAATCGGAGCGTACGGCGCCGCTTCGAGGGGCGTTTTCGTTTCGTCTTCGGCTGGAAACGATGGACCTAATGGAATGTCAGTGACGAACTTGGCGCCGTGGGTTACGACGGTCGGAGCCGGTACGATTGACCGGAATTTCCCGGCGGTGGTGACTCTAGGAAACGGACGGAAGATTTACGGCGTGTCGCTCTACGCTGGAGCGCCGTTGAACGGTACAATGTATCCGTTGGTTTATCCTGGGAAATCAGGGGTGCTCTCTGCTTCGCTCTGTATGGAAAATTCGCTCGACCCTAAGCTGGTGACCGGAAAAATTGTGATCTGCGACAGGGGAAGTAGTCCGAGAGTGGCTAAGGGTTTAGTGGTGAAGAAGGCCGGCGGCATCGGAATGATTCTGGCGAACGGAATTTCAAACGGCGAAGGACTCGTCGGCGATGCCCATCTTCTTCCCGCCTGCGCCGTCGGCTCCGACGAAGGCGATGCCATGAAAGCCTACTCATCGTCCTCTGGAAATCCCACCGCCACCATCGCCTTTCAGGGCACTATAATCGGAATCAAACCGGCGCCAGTGGTGGCTTCGTTTTCAGCAAGAGGACCAAACGGATTAAACCCAGAAATTCTGAAACCGGACTTGATCGCACCGGGGGTCAACATTTTAGCGGCCTGGACCGACGCCGTCGGCCCAACCGGTCTGGACTTCGATACACGAAAAACAGAGTTCAATATCTTGTCAGGTACATCAATGGCGTGTCCTCATGTAAGTGGAGCCGCCGCTCTGTTAAAATCGGCTCACCCAGATTGGAGTCCAGCAGCGTTGCGATCCGCCATGATGACCACCGCAAGTATCACCGACAACCGACGGCAGCCAATGACAGAAGAATCCACCGGAAAAGCTTCTACACCGTACGACTTCGGTGCCGGACATGTGAATCTCGGCCTCGCAATGGACCCCGGTCTAGTCTACGACATTACAAACACCGATTACATAAACTTCCTATGCTCAATCGGCTATGGACCGAAGATGATTCAGGTGATAACTCGAACGCCGGTGACATGTCCGGCGAAGAAGCCATTACCGGAGAATCTGAATTACCCATCAATCGTAGCAGTATTTTCGAGCCTAGCAAAAGGGTGGTCGACAAAATCGTTTATCCGAACGGTGACGAACGTGGGTCCAGCAAATTCAGTGTACCGAGTGAAAATCGAAGCTCCGAAAGGGGTGACGGTGAAGGTAAAGCCGTGGAAACTGGTGTTCTCGACGGCGGTGAAGAAACAGAGCTTCGTGGTGGCAATATCAGCCGACAGCCAGAATCTGGCGCTGGGCGATGTGGGCGCTGTTTTTGGTTGGCTTTCTTGGTCGGATGGAAAGCATGTGGTCCGCAGCCCACTGGTAGTGACCCAATTAGAGCCGTTGTAA 2325 53.81 MAAFLATSLSPLFFFFLLLLIHGSAVSADSPLKTFIFRVDRFSKPSVFPTHYHWYTSEFAESPQILHVYDTVFHGFSATLTQEQVDSIGKHPSVLAVFEDRRRQLHTTRSPQFLGLRNQRGLWSDSDYGSDVIIGVFDTGISPERRSFSDVNLGPIPRRWKGVCQTGTKFTAKNCNRKIVGARFFSKGHEAGSNAAGPIIGINDTIEYRSPRDADGHGTHTASTAAGRHAFQASLEGYASGIAKGVAPKARLAVYKVCWKNSGCFDSDILAAFDAAVNDGVDVISISIGGGDGVSSPYYLDPIAIGAYGAASRGVFVSSSAGNDGPNGMSVTNLAPWVTTVGAGTIDRNFPAVVTLGNGRKIYGVSLYAGAPLNGTMYPLVYPGKSGVLSASLCMENSLDPKLVTGKIVICDRGSSPRVAKGLVVKKAGGIGMILANGISNGEGLVGDAHLLPACAVGSDEGDAMKAYSSSSGNPTATIAFQGTIIGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTDAVGPTGLDFDTRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAALRSAMMTTASITDNRRQPMTEESTGKASTPYDFGAGHVNLGLAMDPGLVYDITNTDYINFLCSIGYGPKMIQVITRTPVTCPAKKPLPENLNYPSIVAVFSSLAKGWSTKSFIRTVTNVGPANSVYRVKIEAPKGVTVKVKPWKLVFSTAVKKQSFVVAISADSQNLALGDVGAVFGWLSWSDGKHVVRSPLVVTQLEPL 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39042713 39045037 + Maker00001500 Lcy8g1248 640140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1248 774 CDD PA_subtilisin_like 353 479 - -
Lcy8g1248 774 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 62 766 IPR045051 -
Lcy8g1248 774 SUPERFAMILY Subtilisin-like 105 622 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy8g1248 774 SUPERFAMILY PA domain 396 473 IPR046450 -
Lcy8g1248 774 Gene3D - 635 771 - -
Lcy8g1248 774 FunFam subtilisin-like protease SBT1.5 347 486 - -
Lcy8g1248 774 Pfam PA domain 378 464 IPR003137 -
Lcy8g1248 774 FunFam Subtilisin-like protease SBT1.5 635 771 - -
Lcy8g1248 774 ProSitePatterns Serine proteases, subtilase family, serine active site. 548 558 IPR023828 -
Lcy8g1248 774 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
Lcy8g1248 774 PRINTS Subtilisin serine protease family (S8) signature 547 563 IPR015500 -
Lcy8g1248 774 PRINTS Subtilisin serine protease family (S8) signature 129 148 IPR015500 -
Lcy8g1248 774 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 23 106 IPR037045 -
Lcy8g1248 774 CDD Peptidases_S8_3 104 584 IPR034197 -
Lcy8g1248 774 Pfam Peptidase inhibitor I9 44 106 IPR010259 -
Lcy8g1248 774 Gene3D Peptidase S8/S53 domain 131 631 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy8g1248 774 Pfam Subtilase family 129 596 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy8g1248 774 ProSiteProfiles Serine proteases, subtilase domain profile. 104 618 - -
Lcy8g1248 774 Pfam Fibronectin type-III domain 664 768 IPR041469 -
Lcy8g1248 774 Gene3D - 347 486 - -
Lcy8g1248 774 FunFam Subtilisin-like protease SBT1.5 131 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2248 Lcy-Chr3:49315876 Lcy8g1248 Lcy-Chr8:39042713 2.30E-246 dispersed
Lcy3g2276 Lcy-Chr3:49588054 Lcy8g1248 Lcy-Chr8:39042713 9.85E-300 dispersed
Lcy6g0219 Lcy-Chr6:2004756 Lcy8g1248 Lcy-Chr8:39042713 6.94E-256 dispersed
Lcy7g1234 Lcy-Chr7:15321455 Lcy8g1248 Lcy-Chr8:39042713 2.36E-229 dispersed
Lcy7g1235 Lcy-Chr7:15369649 Lcy8g1248 Lcy-Chr8:39042713 6.07E-211 dispersed
Lcy8g1248 Lcy-Chr8:39042713 Lcy9g2281 Lcy-Chr9:47238638 9.37E-164 dispersed
Lcy8g1248 Lcy-Chr8:39042713 Lcy1g0936 Lcy-Chr1:8169958 3.98E-254 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1248 - - - 0.0