Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1254 ATGGCTAACGAAGAAGACGATCTCGATCTTCTCCTCTCTCTCCAAGATAAAGTTGTTGAAACTCCTCCTGGAACTCCGCCTCACACCTCAGATTTTCTATCTGACGATGAATCACCAAGGCGAGCGGGTTCTGCGGATATGTCCATCTTCAGAAACGCTGTCAAAGACTGCCTTGACTATGACCACATACCAACTGAGAAAAGTGTAAAAGCAAACCGGTCAAAGACATCTAATGATGCAACAATCGAGAAGTTCTCTGGTTTGCGAATGAGGAATCAACTGGTAGAACCCGCAGAGCTTCGTGATCGGTTTTCTGACATTCGCTTTGTTCGTTTGTCTACCATAAAGAATCTGTTGGTTGGGGACACCCTTTCAGGCTGTTGGGCAACTGTCGGAGTGTTGACTGAGAAAGGGAGTCCAAAGACAAGCTCTACGGGAAAAGCTTACTGCATTTGGAAACTTAGCTGTTTGAATGAAAACACTGTTTCTGTTTTCTTATTTGGTGATGCTTATAAAAGAAATTGCAAGGAGCTGGCTGGAACAGTTTTTGCACTTTTTAACTCTACTGTACGCAAGGATGCAGCGGGCATGGGGTTTTCTTTAAGTGTGTATCAACCAAGCCAGTTGTTAAAGATGGGCACTTCAGATGACTATGGAGTATGCAAGGGGAAGAAGAAGGATGGGATGGTTTGTACAACAGTAATAAATAGGCGACGTGGCATATACTGTAAATATCATAAATCAGTAAGTATTGATGTTATCAATATCCTAATCTTGTTATGCATGTGGATTTTGAAAGCGCATCGAACTGATACAGTGATACTTCTTTCTATTGTTGTCTTACAGAAGGCATCAGAAAAATATTCCACAACCACGCGAACTGAGCTCAAAGGAGGGAATCTGAGGACTGCATTCAGAGATTATCATCTCAAGGCAGAAGGAGTTTACATGGTAGATCCGCTAGCTGGTAAAGTGAATCTTAAAAAATCAGCAGCGCCAGTCAAATTGTTGTCTGTGGAAGGCCTTAAAAAGGCATTGAGCAATGCAGATAAAGTGACCACCAATGCACACTCACAAGGGAAAAGATTCCTTGCTGAGATCACAGGGAAATTGTGTGATAAAAGTGTAAATAATGAATCAGCCAAACAAAGTCAGCAAAGGATCAGTTCAGAGAAGACGTCAATTTCGAAGTCATCTACTATGAAACTGGATTCAGGAATTCAAAACCAACAACCAGATCCAAAAAGAAAGAAAACCGACCACGCACCAGCAGACAAAACCACAAATAATATTGGAAAGATGATCGAGTTGGATTATGTTAGTTCAGATGATGAAATCGAGTTTACATTCACCCGATAA 1359 41.43 MANEEDDLDLLLSLQDKVVETPPGTPPHTSDFLSDDESPRRAGSADMSIFRNAVKDCLDYDHIPTEKSVKANRSKTSNDATIEKFSGLRMRNQLVEPAELRDRFSDIRFVRLSTIKNLLVGDTLSGCWATVGVLTEKGSPKTSSTGKAYCIWKLSCLNENTVSVFLFGDAYKRNCKELAGTVFALFNSTVRKDAAGMGFSLSVYQPSQLLKMGTSDDYGVCKGKKKDGMVCTTVINRRRGIYCKYHKSVSIDVINILILLCMWILKAHRTDTVILLSIVVLQKASEKYSTTTRTELKGGNLRTAFRDYHLKAEGVYMVDPLAGKVNLKKSAAPVKLLSVEGLKKALSNADKVTTNAHSQGKRFLAEITGKLCDKSVNNESAKQSQQRISSEKTSISKSSTMKLDSGIQNQQPDPKRKKTDHAPADKTTNNIGKMIELDYVSSDDEIEFTFTR 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39120791 39126364 + Maker00000936 Lcy8g1254 640146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1254 452 PANTHER PROTEIN MCM10 HOMOLOG 2 423 IPR040184 GO:0003688(PANTHER)|GO:0003690(InterPro)|GO:0003697(InterPro)|GO:0003697(PANTHER)|GO:0006270(InterPro)|GO:0006270(PANTHER)|GO:0043596(PANTHER)
Lcy8g1254 452 MobiDBLite consensus disorder prediction 378 433 - -
Lcy8g1254 452 Pfam MCM10 OB-fold 84 210 IPR055065 -
Lcy8g1254 452 FunFam DNA replication licensing factor mcm10 74 248 - -
Lcy8g1254 452 MobiDBLite consensus disorder prediction 378 410 - -
Lcy8g1254 452 Gene3D - 73 247 IPR012340 -
Lcy8g1254 452 MobiDBLite consensus disorder prediction 17 44 - -
Lcy8g1254 452 Pfam Primase zinc finger 213 249 IPR015408 GO:0005634(InterPro)|GO:0006260(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1254 K10736 - csv:101219022 680.248