Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1261 ATGGCCGATTCTCGACCGCTGCTGAAGGATCAACAGGAGGAGTTGCCGGAGTCCACTCGCAAAGCGCCGCGCGTTGTCTCACTCGACGTCTTTCGCGGACTCAGCGTCTTTGTTAGTTCTCTCTTTTCATCTCTGGATCTCGACTCACTAAACACACTGAATACTTCTCTTCATATGATGATGTTCGTGGACTACGGTGGCTCTTTTTTACCAATTATCGCTCATTCGCCATGGAATGGACTTCATTTGGCTGATTTTGTGATGCCTTGGTTTCTATTTATTGCGGGAGTCTCGCTTGCACTTGTTTATAAAGAAGTAAAAAGTAAAGTGGCCGCTACAAGGAATGCAGCATGCAGGGGTCTGTACCTTTTTCTCCTGGGTGTTCTTCTTCAAGGTGGTTACTTTCATGGAATAACATCTTTGACTTATGGTGTGGATATGGAAAGGATTAGGTGGCTTGGCATTTTGCAGAGAATATCTGTTGGATACTTGATTGCTGCACTATGTGAGATTTGGCTAACTCGTCGCATACGTGAAGAAGCTCAACATACTAAGAGTTTCAGCTGGCATTGGTGTACTATATTTTTTCTGTTGTCAATGTATATGGGACTGTTGTATGGTTTATATGTTCCAGATTGGGACTTCAAAATATCAAGCACGAGCTCTTCACTTCCACCAAATGGAAGCTATATTTACATGGTGAATTGTTCTGTTCGAGGTGACCTGGGACCTGCATGTAATTCTGCTGGGATGATTGATCGTTATGTTCTTGGTATTCACCATTTGTATACTAAACCTGTCTACAGAAATCTGAAGGAGTGTAACATTTCCTCCAGTGGTCAAGTTCCTGAGACTGCACCTTCGTGGTGTCATGCTCCGTTTGAACCTGAAGGTCTTTTAAGCTCTTTAACAGCTACAGTGGCATGCATAATAGGACTTCAGTATGGTCACATTCTTGCCAATGTACAGGATCACAAAAGTCGCACCAGTGGCTGGTTCTCACTCTCGCTTAAGATTTTGGCTCTCGGAATATTCCTTGTCTTTGTAGGTATCCCTGTAAATAAGTCCCTTTACACAGTCAGCTATATGTTGATTACTTCAGCATCAGCAGGAATAATCTTTTGTGCTCTATACATCTTGGCGCGGCATCGTATAAAGAACGGCTTACCACCGTGTGGACGTCCACGGTTATCGACGCTTGACATGTATTCTGGAGTGGATGGGGAAGCATGCTTTGAGTGCATTGGATTTAATCGTAGTGCTCGAGGTCTGTCCGATTGTATTCGAAATCACTCTGCAAATACTAAGCAAAAAGGCTGTGGTAAGAAGATAACAGAGCCATTGCAACAGGCCAAGGACTATGTGGATCCGCCACCAGCTCCATTGATGGGCTTCTCCGAGCTGAAGCTATGGTCTTTTTACAGAGCTGTAATTGCAGAGTTCATGGCCACTCTGCTTTTCCTGTACATCACCATCGCCACTGTCATTGGAAACAATGCACAAACAGGACCCTGTTCTGGCGTTGGCCTTCTCGGCATAGCATGGGCCTTCGGCGCCATGATCTTCGTCCTCGTTTACTGCACTGCTGGTATTTCAGGTGGCCATATCAACCCCGCCGTCACGTTCGGGCTGCTGTTGGCCAGAAGGGTGTCGCTGATCCGCGCGGTGGCTTACATGGCGGCCCAGTGTCTGGGAGCCATTGCCGGCGTTGCCTTGGTTAAATCTTTCATGAGGCATGCCTACAACAGCCACGGCGGCGGAGCCAACCTCGTCGCCGCCGGCATCAGCAAAGGCACCGCTCTCGGTGCTGAGATCATCGGCACTTTTCTGCTGGTCTACACTGTGTTTTCAGCCACTGACCCTAAAAGAAATGCTCGCGACTCCCATGTTCCTGTTTTGGCTCCATTGCCCATTGGACTGGCCGTCTTTGTTGTGCACCTTGCCACCATTCCGATTACCGGCACCGGCATCAACCCTGCTCGGAGCTTAGGCGCCGCGGTCGTATTCAACAACAGAAGAGTCTGGAGCCACCATTGGATTTTTTGGGTAGGGCCATTTGTTGGGGCGCTGGCAGCGGCGGTGTACCACCAGTACGTTCTCAGAGCGGCGGCCGTCAAGGCACTTGGATCTTTCCGCAGCAACCGCTCCGTTTGA 2154 48.47 MADSRPLLKDQQEELPESTRKAPRVVSLDVFRGLSVFVSSLFSSLDLDSLNTLNTSLHMMMFVDYGGSFLPIIAHSPWNGLHLADFVMPWFLFIAGVSLALVYKEVKSKVAATRNAACRGLYLFLLGVLLQGGYFHGITSLTYGVDMERIRWLGILQRISVGYLIAALCEIWLTRRIREEAQHTKSFSWHWCTIFFLLSMYMGLLYGLYVPDWDFKISSTSSSLPPNGSYIYMVNCSVRGDLGPACNSAGMIDRYVLGIHHLYTKPVYRNLKECNISSSGQVPETAPSWCHAPFEPEGLLSSLTATVACIIGLQYGHILANVQDHKSRTSGWFSLSLKILALGIFLVFVGIPVNKSLYTVSYMLITSASAGIIFCALYILARHRIKNGLPPCGRPRLSTLDMYSGVDGEACFECIGFNRSARGLSDCIRNHSANTKQKGCGKKITEPLQQAKDYVDPPPAPLMGFSELKLWSFYRAVIAEFMATLLFLYITIATVIGNNAQTGPCSGVGLLGIAWAFGAMIFVLVYCTAGISGGHINPAVTFGLLLARRVSLIRAVAYMAAQCLGAIAGVALVKSFMRHAYNSHGGGANLVAAGISKGTALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHLATIPITGTGINPARSLGAAVVFNNRRVWSHHWIFWVGPFVGALAAAVYHQYVLRAAAVKALGSFRSNRSV 717
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 39184051 39193162 + Maker00001048 Lcy8g1261 640153
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1261 717 Gene3D Glycerol uptake facilitator protein. 460 717 IPR023271 -
Lcy8g1261 717 PRINTS Major intrinsic protein family signature 475 494 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1261 717 PRINTS Major intrinsic protein family signature 554 573 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1261 717 PRINTS Major intrinsic protein family signature 517 541 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1261 717 PRINTS Major intrinsic protein family signature 603 621 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1261 717 PRINTS Major intrinsic protein family signature 679 699 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1261 717 PRINTS Major intrinsic protein family signature 639 661 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1261 717 CDD MIP 475 699 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1261 717 NCBIfam MIP family channel protein 479 695 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1261 717 Pfam Major intrinsic protein 467 696 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1261 717 SUPERFAMILY Aquaporin-like 467 701 IPR023271 -
Lcy8g1261 717 FunFam Probable aquaporin PIP1-2 460 715 - -
Lcy8g1261 717 PANTHER LD22376P 15 380 - -
Lcy8g1261 717 ProSitePatterns MIP family signature. 535 543 IPR022357 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0312 Lcy-Chr5:2955590 Lcy8g1261 Lcy-Chr8:39184051 1.70E-71 dispersed
Lcy5g0316 Lcy-Chr5:3015208 Lcy8g1261 Lcy-Chr8:39184051 1.47E-23 dispersed
Lcy7g0654 Lcy-Chr7:6003407 Lcy8g1261 Lcy-Chr8:39184051 3.18E-137 dispersed
Lcy8g1261 Lcy-Chr8:39184051 Lcy8g1900 Lcy-Chr8:45259851 3.60E-134 dispersed
Lcy11g0890 Lcy-Chr11:26478043 Lcy8g1261 Lcy-Chr8:39184051 3.53E-108 transposed
Lcy4g1820 Lcy-Chr4:44252424 Lcy8g1261 Lcy-Chr8:39184051 9.96E-67 transposed
Lcy3g0895 Lcy-Chr3:31885171 Lcy8g1261 Lcy-Chr8:39184051 7.67E-153 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1261 - - - 0.0