Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1261 | ATGGCCGATTCTCGACCGCTGCTGAAGGATCAACAGGAGGAGTTGCCGGAGTCCACTCGCAAAGCGCCGCGCGTTGTCTCACTCGACGTCTTTCGCGGACTCAGCGTCTTTGTTAGTTCTCTCTTTTCATCTCTGGATCTCGACTCACTAAACACACTGAATACTTCTCTTCATATGATGATGTTCGTGGACTACGGTGGCTCTTTTTTACCAATTATCGCTCATTCGCCATGGAATGGACTTCATTTGGCTGATTTTGTGATGCCTTGGTTTCTATTTATTGCGGGAGTCTCGCTTGCACTTGTTTATAAAGAAGTAAAAAGTAAAGTGGCCGCTACAAGGAATGCAGCATGCAGGGGTCTGTACCTTTTTCTCCTGGGTGTTCTTCTTCAAGGTGGTTACTTTCATGGAATAACATCTTTGACTTATGGTGTGGATATGGAAAGGATTAGGTGGCTTGGCATTTTGCAGAGAATATCTGTTGGATACTTGATTGCTGCACTATGTGAGATTTGGCTAACTCGTCGCATACGTGAAGAAGCTCAACATACTAAGAGTTTCAGCTGGCATTGGTGTACTATATTTTTTCTGTTGTCAATGTATATGGGACTGTTGTATGGTTTATATGTTCCAGATTGGGACTTCAAAATATCAAGCACGAGCTCTTCACTTCCACCAAATGGAAGCTATATTTACATGGTGAATTGTTCTGTTCGAGGTGACCTGGGACCTGCATGTAATTCTGCTGGGATGATTGATCGTTATGTTCTTGGTATTCACCATTTGTATACTAAACCTGTCTACAGAAATCTGAAGGAGTGTAACATTTCCTCCAGTGGTCAAGTTCCTGAGACTGCACCTTCGTGGTGTCATGCTCCGTTTGAACCTGAAGGTCTTTTAAGCTCTTTAACAGCTACAGTGGCATGCATAATAGGACTTCAGTATGGTCACATTCTTGCCAATGTACAGGATCACAAAAGTCGCACCAGTGGCTGGTTCTCACTCTCGCTTAAGATTTTGGCTCTCGGAATATTCCTTGTCTTTGTAGGTATCCCTGTAAATAAGTCCCTTTACACAGTCAGCTATATGTTGATTACTTCAGCATCAGCAGGAATAATCTTTTGTGCTCTATACATCTTGGCGCGGCATCGTATAAAGAACGGCTTACCACCGTGTGGACGTCCACGGTTATCGACGCTTGACATGTATTCTGGAGTGGATGGGGAAGCATGCTTTGAGTGCATTGGATTTAATCGTAGTGCTCGAGGTCTGTCCGATTGTATTCGAAATCACTCTGCAAATACTAAGCAAAAAGGCTGTGGTAAGAAGATAACAGAGCCATTGCAACAGGCCAAGGACTATGTGGATCCGCCACCAGCTCCATTGATGGGCTTCTCCGAGCTGAAGCTATGGTCTTTTTACAGAGCTGTAATTGCAGAGTTCATGGCCACTCTGCTTTTCCTGTACATCACCATCGCCACTGTCATTGGAAACAATGCACAAACAGGACCCTGTTCTGGCGTTGGCCTTCTCGGCATAGCATGGGCCTTCGGCGCCATGATCTTCGTCCTCGTTTACTGCACTGCTGGTATTTCAGGTGGCCATATCAACCCCGCCGTCACGTTCGGGCTGCTGTTGGCCAGAAGGGTGTCGCTGATCCGCGCGGTGGCTTACATGGCGGCCCAGTGTCTGGGAGCCATTGCCGGCGTTGCCTTGGTTAAATCTTTCATGAGGCATGCCTACAACAGCCACGGCGGCGGAGCCAACCTCGTCGCCGCCGGCATCAGCAAAGGCACCGCTCTCGGTGCTGAGATCATCGGCACTTTTCTGCTGGTCTACACTGTGTTTTCAGCCACTGACCCTAAAAGAAATGCTCGCGACTCCCATGTTCCTGTTTTGGCTCCATTGCCCATTGGACTGGCCGTCTTTGTTGTGCACCTTGCCACCATTCCGATTACCGGCACCGGCATCAACCCTGCTCGGAGCTTAGGCGCCGCGGTCGTATTCAACAACAGAAGAGTCTGGAGCCACCATTGGATTTTTTGGGTAGGGCCATTTGTTGGGGCGCTGGCAGCGGCGGTGTACCACCAGTACGTTCTCAGAGCGGCGGCCGTCAAGGCACTTGGATCTTTCCGCAGCAACCGCTCCGTTTGA | 2154 | 48.47 | MADSRPLLKDQQEELPESTRKAPRVVSLDVFRGLSVFVSSLFSSLDLDSLNTLNTSLHMMMFVDYGGSFLPIIAHSPWNGLHLADFVMPWFLFIAGVSLALVYKEVKSKVAATRNAACRGLYLFLLGVLLQGGYFHGITSLTYGVDMERIRWLGILQRISVGYLIAALCEIWLTRRIREEAQHTKSFSWHWCTIFFLLSMYMGLLYGLYVPDWDFKISSTSSSLPPNGSYIYMVNCSVRGDLGPACNSAGMIDRYVLGIHHLYTKPVYRNLKECNISSSGQVPETAPSWCHAPFEPEGLLSSLTATVACIIGLQYGHILANVQDHKSRTSGWFSLSLKILALGIFLVFVGIPVNKSLYTVSYMLITSASAGIIFCALYILARHRIKNGLPPCGRPRLSTLDMYSGVDGEACFECIGFNRSARGLSDCIRNHSANTKQKGCGKKITEPLQQAKDYVDPPPAPLMGFSELKLWSFYRAVIAEFMATLLFLYITIATVIGNNAQTGPCSGVGLLGIAWAFGAMIFVLVYCTAGISGGHINPAVTFGLLLARRVSLIRAVAYMAAQCLGAIAGVALVKSFMRHAYNSHGGGANLVAAGISKGTALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHLATIPITGTGINPARSLGAAVVFNNRRVWSHHWIFWVGPFVGALAAAVYHQYVLRAAAVKALGSFRSNRSV | 717 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 39184051 | 39193162 | + | Maker00001048 | Lcy8g1261 | 640153 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1261 | 717 | Gene3D | Glycerol uptake facilitator protein. | 460 | 717 | IPR023271 | - | |
| Lcy8g1261 | 717 | PRINTS | Major intrinsic protein family signature | 475 | 494 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy8g1261 | 717 | PRINTS | Major intrinsic protein family signature | 554 | 573 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy8g1261 | 717 | PRINTS | Major intrinsic protein family signature | 517 | 541 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy8g1261 | 717 | PRINTS | Major intrinsic protein family signature | 603 | 621 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy8g1261 | 717 | PRINTS | Major intrinsic protein family signature | 679 | 699 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy8g1261 | 717 | PRINTS | Major intrinsic protein family signature | 639 | 661 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy8g1261 | 717 | CDD | MIP | 475 | 699 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy8g1261 | 717 | NCBIfam | MIP family channel protein | 479 | 695 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy8g1261 | 717 | Pfam | Major intrinsic protein | 467 | 696 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy8g1261 | 717 | SUPERFAMILY | Aquaporin-like | 467 | 701 | IPR023271 | - | |
| Lcy8g1261 | 717 | FunFam | Probable aquaporin PIP1-2 | 460 | 715 | - | - | |
| Lcy8g1261 | 717 | PANTHER | LD22376P | 15 | 380 | - | - | |
| Lcy8g1261 | 717 | ProSitePatterns | MIP family signature. | 535 | 543 | IPR022357 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g0312 | Lcy-Chr5:2955590 | Lcy8g1261 | Lcy-Chr8:39184051 | 1.70E-71 | dispersed | |
| Lcy5g0316 | Lcy-Chr5:3015208 | Lcy8g1261 | Lcy-Chr8:39184051 | 1.47E-23 | dispersed | |
| Lcy7g0654 | Lcy-Chr7:6003407 | Lcy8g1261 | Lcy-Chr8:39184051 | 3.18E-137 | dispersed | |
| Lcy8g1261 | Lcy-Chr8:39184051 | Lcy8g1900 | Lcy-Chr8:45259851 | 3.60E-134 | dispersed | |
| Lcy11g0890 | Lcy-Chr11:26478043 | Lcy8g1261 | Lcy-Chr8:39184051 | 3.53E-108 | transposed | |
| Lcy4g1820 | Lcy-Chr4:44252424 | Lcy8g1261 | Lcy-Chr8:39184051 | 9.96E-67 | transposed | |
| Lcy3g0895 | Lcy-Chr3:31885171 | Lcy8g1261 | Lcy-Chr8:39184051 | 7.67E-153 | wgd |
Pathway information