Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1268 ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGAATCGACATGTGCACAAAGGTTCAGATGCTGGTGGTCGACAGGATGGTCTCCTATGGTACAAAGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAAGATCAAAGCCAGATGGAGTCAGGCAATTTGAGCTTGCACGAGTCCGGGCCATATGGTACCTTTGTTGGCGTGTATGATGGCCATGGAGGGCCCGAGACATCTCGCTATGTAAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCGGAGCAACAATCCATGTCAGTGGATGTCATACGAAAGGCTTTTCAAGCTACTGAAGAGGGGGTCATTGCTCAAGTTTCGAAACAATGGTCGATGAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTTGGTGTCATTTGTGGTGGAACCCTTTACATTGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCAACAGGGGAAGTTTTGTCTGTTCAGTTGTCCGCTGAGCATAATGCATCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGACCCACAGATTGTAGTTTTGAAGCATAATGTATGGCGCGTGAAGGGCCTTATACAGGTTTCTCGATCTATCGGTGATGTCTATTTAAAGAAAGCTGAGTTCAACCGAGAGCCTCTTTATGCTAAGTTCCGCCTTCGCGAACCTATCAAAAAGCCCATACTGAGCGCTGAACCATCTATTTCAGTGCTCCAATTGCAGCCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCACCCACGTAGTGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTGCAAGAGGCAGCAAAGAAGAGAGAAATGCGATATTCCGATTTGAAGAAGATTGACCGTGGCGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTTTTTCTCGACTCAAACCTTGTGAGCCGGGCTAGCTCTACAAAATGTGCAAGCCTATCCGTGCGAGGGGGCGGAGTTAACTTGCGTCCAAACTCATTGGCCCCTTGCACCACACCATCAGACACTGGCATGGCCTGA 1194 47.32 MFSELMNFLRACFRPRSNRHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHESGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMRPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPQIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNREPLYAKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSVRGGGVNLRPNSLAPCTTPSDTGMA 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39272682 39276372 + Maker00001022 Lcy8g1268 640160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1268 397 FunFam Phosphatase 2C family protein 36 365 - -
Lcy8g1268 397 PANTHER PROTEIN PHOSPHATASE 39 354 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy8g1268 397 Pfam Protein phosphatase 2C 75 323 IPR001932 -
Lcy8g1268 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Lcy8g1268 397 CDD PP2Cc 48 355 IPR001932 -
Lcy8g1268 397 SMART PP2C_4 39 353 IPR001932 -
Lcy8g1268 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Lcy8g1268 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Lcy8g1268 397 Gene3D - 35 367 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0857 Lcy-Chr12:11843620 Lcy8g1268 Lcy-Chr8:39272682 2.52E-138 dispersed
Lcy4g0184 Lcy-Chr4:2362250 Lcy8g1268 Lcy-Chr8:39272682 3.69E-39 dispersed
Lcy5g0243 Lcy-Chr5:2326871 Lcy8g1268 Lcy-Chr8:39272682 1.25E-169 dispersed
Lcy5g0598 Lcy-Chr5:6873031 Lcy8g1268 Lcy-Chr8:39272682 7.25E-142 dispersed
Lcy7g0798 Lcy-Chr7:7713865 Lcy8g1268 Lcy-Chr8:39272682 1.04E-180 dispersed
Lcy8g1268 Lcy-Chr8:39272682 Lcy8g1522 Lcy-Chr8:41844103 1.22E-10 dispersed
Lcy1g0591 Lcy-Chr1:5033129 Lcy8g1268 Lcy-Chr8:39272682 3.00E-231 wgd
Lcy3g0879 Lcy-Chr3:31657179 Lcy8g1268 Lcy-Chr8:39272682 2.76E-224 wgd
Lcy6g2327 Lcy-Chr6:48069976 Lcy8g1268 Lcy-Chr8:39272682 3.56E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1268 - - - 0.0