Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1282 ATGGATTTCGCCATCAAGTCCTTCAAATCCCACGGCTCTTACAAGTATGTGAGGAAACTTTCTGGAACAGACGCTGCTCAGGATCAAGAACAGCTTCCCATTCTTTCAGATCAGGAGCCGGATAATCATCACCGGCAACACTCCGTTATGGATGCGTCCGACCGGAGAGAGGTCGTTGTCAAGATCGATCGGGCAGATGCTTCGAGTAATGTATCGTCGAGAGCGGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATAGTCGACGGAATAATGGTGAAGGTGCTAATGGCGATGGCAGGAGTGAGGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCCTCGAAGCTTATTGGGCAGTTTCTGCACAAGCAGAAGGCGTCCGGAGAGATGTCGTTGGATATGGATTTGGAGATGTTGGAACTACCACTTGATAAGACTCTGTCTCCGGTGGCGGAATCTCCGTTGCGACGGAACTCCAGAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCTGAAAATGATTCGATGCGAAGGCGGCATAGAGACTCGCCGGCTGATGAAGAACATAGAGCAGGACAGCAACCGCAGCAGCGTGATCGTCGAGCGTACGGCAATGGTCATGATGATGGTGGTGCTGAGGTGGTGAGATGCACGTCTAATTCGTCGTTTCAGAGAGATGCATCGTTCCAGAGAAAATCTAGCTTGCTAAAGGCTAAAACTAAGTCCAGATTGCTGGACCCGCCTGAACAGCCGGACCGGAGGTCAGGGCGAGTACCAAGATCAGGGCAAATGCGCTCCGGTTTGTTGTCGAAACCCTTGGATGAAGAAGAAGACGATCCATTCTTGGAGGAAGATCTTCCAGATGAGTATAAGAAGGCCAATCTTGGTGTTCTGACTCTGTTACAATGGGCGAGTTTAATTTTGATAATCGCGGCATTGGTATGCACTCTTACAATCCCTTACTGGAGTAAAAAGAATCTATGGAAACTTAGGTTATGGAAATGGGAGGTTATGATTCTAGTTTTGATATGTGGAAGGCTAGTTTCAGGGTGGGGCATAAGGATAATCGTCTTCTTCATTGAGAGAAACTTTCTACTGCGTAAAAGGGTTTTATACTTCGTTTATGGGGTTAGAAAGGCAGTTCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAAATTGTTGTTCGATGACAAAGTTCAAAGAGAAGTCAAAAGCAATGCCCTCGAATATGTGACTAAAGTTCTTGTATGCCTTCTTGTAAGCACTTTGGTTTGGTTGGTGAAAACTTTGATGGTGAAAGTTCTGGCCTCTTCTTTCCATGTGAGTACATATTTCGATAGGATTCAGGATGCACTATTTAACCAATATGTAATTGAGACCCTGTCAGGACCGCCATTGATAGAAATTCAAAAGAACGAGGAAGAAGAAGAGAGGCTTGCAGAAGAGGTTATTAAGTTACAGAATGCAGGGGCCACCATCCCTCCTGATCTAAAGGCAACTGCCTTTCCAACTACAAAGGGTGGACGAGTGATTGGGAGTGGAGGACTACAGAAAAGCCCGCGTGGAAGAAGTGCCAAGCTCTCACGGGCGCTCTCCAAAAATGGCGACGAGGGTATAACAATTGATCATTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAACATCGTTCGACATGGAGCTCTTTCAACTTTGGATGAACAAATAAAGGATTCAACTCACGAGGACGAATCGGCCACACAGATCAGGAGTGAATATGAAGCAAAAGTTGCTGCTAAGAAGATCTTTCAAAACGTGGCTAGACATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCATGCCAGAAGATGAAGCTTCAAAATCCATGAGTCTCTTTGAAGGAGCATCTGAAAGCAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACCTTGAACGATACTAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTCTGGTTTCTGTTATTATTCTGGTTATTTGGCTACTGATTCTTGGTATAGCCACCAGCAAGTTTCTCCTATTTGTCACCTCTCAACTTGTCCTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTATTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGCGACCGATGCGAGATTGATGGTGTGCAGATGATCGTAGAAGAAATGAATATTCTGACAACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGCGTTCTTGCAACCAAGGCCATCCACAACTACTACCGCAGCCCCGACATGGGCGATGCTGTTGAATTTTGTCTTCACATATCTACTCCGCCTGATAAAATTGCTCTCATGAGACAGAGAATAGTAAGTTACATCGAGGGCAAGAAGGAGCATTGGTGCCCTGCGCCAATGATTATCCTCAAGGACGTAGAAGAGTTGAATAGGATGAGAATAGCCATATGGCCTACTCATAGAATGAACCATCAAGACATGGGAGAGAGGTGGGCAAGGAGAGCCCTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTCGACCTTCAATACCGTCTGCTACCGCTCGATATCAATGTACGTTCCTTGCCTCCAGTGAACTCTACAAGGCTTCCAGCTACTTGGACAGCCCCTGCAAGTTGA 2808 45.05 MDFAIKSFKSHGSYKYVRKLSGTDAAQDQEQLPILSDQEPDNHHRQHSVMDASDRREVVVKIDRADASSNVSSRAVESVNSSGRIWRESSYDFWNDSDSRRNNGEGANGDGRSEDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDLEMLELPLDKTLSPVAESPLRRNSRELKVSFESISEISENDSMRRRHRDSPADEEHRAGQQPQQRDRRAYGNGHDDGGAEVVRCTSNSSFQRDASFQRKSSLLKAKTKSRLLDPPEQPDRRSGRVPRSGQMRSGLLSKPLDEEEDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIPYWSKKNLWKLRLWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWKLLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFPTTKGGRVIGSGGLQKSPRGRSAKLSRALSKNGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEDESATQIRSEYEAKVAAKKIFQNVARHGSKYIYLEDLMRFMPEDEASKSMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPDKIALMRQRIVSYIEGKKEHWCPAPMIILKDVEELNRMRIAIWPTHRMNHQDMGERWARRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTRLPATWTAPAS 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39424517 39428830 - Maker00001317 Lcy8g1282 640174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1282 935 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 40 931 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Lcy8g1282 935 Coils Coil 490 513 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 189 225 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 258 297 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 27 56 - -
Lcy8g1282 935 PIRSF Memb_At2g17000 40 935 IPR016688 -
Lcy8g1282 935 Gene3D - 759 808 IPR023408 -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 96 131 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 189 232 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 96 129 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 37 56 - -
Lcy8g1282 935 FunFam Predicted mechanosensitive ion channel 759 808 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 260 277 - -
Lcy8g1282 935 SUPERFAMILY Sm-like ribonucleoproteins 749 808 IPR010920 -
Lcy8g1282 935 Pfam Mechanosensitive ion channel, beta-domain 752 809 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0518 Lcy-Chr13:6427292 Lcy8g1282 Lcy-Chr8:39424517 2.03E-167 dispersed
Lcy8g1282 Lcy-Chr8:39424517 Lcy9g1946 Lcy-Chr9:44456524 2.70E-149 dispersed
Lcy9g2295 Lcy-Chr9:47354698 Lcy8g1282 Lcy-Chr8:39424517 1.04E-210 transposed
Lcy3g0859 Lcy-Chr3:30985005 Lcy8g1282 Lcy-Chr8:39424517 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1282 K22048 - csv:101210264 1547.72