Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1282 ATGGATTTCGCCATCAAGTCCTTCAAATCCCACGGCTCTTACAAGTATGTGAGGAAACTTTCTGGAACAGACGCTGCTCAGGATCAAGAACAGCTTCCCATTCTTTCAGATCAGGAGCCGGATAATCATCACCGGCAACACTCCGTTATGGATGCGTCCGACCGGAGAGAGGTCGTTGTCAAGATCGATCGGGCAGATGCTTCGAGTAATGTATCGTCGAGAGCGGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATAGTCGACGGAATAATGGTGAAGGTGCTAATGGCGATGGCAGGAGTGAGGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCCTCGAAGCTTATTGGGCAGTTTCTGCACAAGCAGAAGGCGTCCGGAGAGATGTCGTTGGATATGGATTTGGAGATGTTGGAACTACCACTTGATAAGACTCTGTCTCCGGTGGCGGAATCTCCGTTGCGACGGAACTCCAGAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCTGAAAATGATTCGATGCGAAGGCGGCATAGAGACTCGCCGGCTGATGAAGAACATAGAGCAGGACAGCAACCGCAGCAGCGTGATCGTCGAGCGTACGGCAATGGTCATGATGATGGTGGTGCTGAGGTGGTGAGATGCACGTCTAATTCGTCGTTTCAGAGAGATGCATCGTTCCAGAGAAAATCTAGCTTGCTAAAGGCTAAAACTAAGTCCAGATTGCTGGACCCGCCTGAACAGCCGGACCGGAGGTCAGGGCGAGTACCAAGATCAGGGCAAATGCGCTCCGGTTTGTTGTCGAAACCCTTGGATGAAGAAGAAGACGATCCATTCTTGGAGGAAGATCTTCCAGATGAGTATAAGAAGGCCAATCTTGGTGTTCTGACTCTGTTACAATGGGCGAGTTTAATTTTGATAATCGCGGCATTGGTATGCACTCTTACAATCCCTTACTGGAGTAAAAAGAATCTATGGAAACTTAGGTTATGGAAATGGGAGGTTATGATTCTAGTTTTGATATGTGGAAGGCTAGTTTCAGGGTGGGGCATAAGGATAATCGTCTTCTTCATTGAGAGAAACTTTCTACTGCGTAAAAGGGTTTTATACTTCGTTTATGGGGTTAGAAAGGCAGTTCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAAATTGTTGTTCGATGACAAAGTTCAAAGAGAAGTCAAAAGCAATGCCCTCGAATATGTGACTAAAGTTCTTGTATGCCTTCTTGTAAGCACTTTGGTTTGGTTGGTGAAAACTTTGATGGTGAAAGTTCTGGCCTCTTCTTTCCATGTGAGTACATATTTCGATAGGATTCAGGATGCACTATTTAACCAATATGTAATTGAGACCCTGTCAGGACCGCCATTGATAGAAATTCAAAAGAACGAGGAAGAAGAAGAGAGGCTTGCAGAAGAGGTTATTAAGTTACAGAATGCAGGGGCCACCATCCCTCCTGATCTAAAGGCAACTGCCTTTCCAACTACAAAGGGTGGACGAGTGATTGGGAGTGGAGGACTACAGAAAAGCCCGCGTGGAAGAAGTGCCAAGCTCTCACGGGCGCTCTCCAAAAATGGCGACGAGGGTATAACAATTGATCATTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAACATCGTTCGACATGGAGCTCTTTCAACTTTGGATGAACAAATAAAGGATTCAACTCACGAGGACGAATCGGCCACACAGATCAGGAGTGAATATGAAGCAAAAGTTGCTGCTAAGAAGATCTTTCAAAACGTGGCTAGACATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCATGCCAGAAGATGAAGCTTCAAAATCCATGAGTCTCTTTGAAGGAGCATCTGAAAGCAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACCTTGAACGATACTAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTCTGGTTTCTGTTATTATTCTGGTTATTTGGCTACTGATTCTTGGTATAGCCACCAGCAAGTTTCTCCTATTTGTCACCTCTCAACTTGTCCTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTATTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGCGACCGATGCGAGATTGATGGTGTGCAGATGATCGTAGAAGAAATGAATATTCTGACAACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGCGTTCTTGCAACCAAGGCCATCCACAACTACTACCGCAGCCCCGACATGGGCGATGCTGTTGAATTTTGTCTTCACATATCTACTCCGCCTGATAAAATTGCTCTCATGAGACAGAGAATAGTAAGTTACATCGAGGGCAAGAAGGAGCATTGGTGCCCTGCGCCAATGATTATCCTCAAGGACGTAGAAGAGTTGAATAGGATGAGAATAGCCATATGGCCTACTCATAGAATGAACCATCAAGACATGGGAGAGAGGTGGGCAAGGAGAGCCCTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTCGACCTTCAATACCGTCTGCTACCGCTCGATATCAATGTACGTTCCTTGCCTCCAGTGAACTCTACAAGGCTTCCAGCTACTTGGACAGCCCCTGCAAGTTGA 2808 45.05 MDFAIKSFKSHGSYKYVRKLSGTDAAQDQEQLPILSDQEPDNHHRQHSVMDASDRREVVVKIDRADASSNVSSRAVESVNSSGRIWRESSYDFWNDSDSRRNNGEGANGDGRSEDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDLEMLELPLDKTLSPVAESPLRRNSRELKVSFESISEISENDSMRRRHRDSPADEEHRAGQQPQQRDRRAYGNGHDDGGAEVVRCTSNSSFQRDASFQRKSSLLKAKTKSRLLDPPEQPDRRSGRVPRSGQMRSGLLSKPLDEEEDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIPYWSKKNLWKLRLWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWKLLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFPTTKGGRVIGSGGLQKSPRGRSAKLSRALSKNGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEDESATQIRSEYEAKVAAKKIFQNVARHGSKYIYLEDLMRFMPEDEASKSMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPDKIALMRQRIVSYIEGKKEHWCPAPMIILKDVEELNRMRIAIWPTHRMNHQDMGERWARRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTRLPATWTAPAS 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39424517 39428830 - Maker00001317 Lcy8g1282 640174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1282 935 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 40 931 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Lcy8g1282 935 Coils Coil 490 513 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 189 225 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 258 297 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 27 56 - -
Lcy8g1282 935 PIRSF Memb_At2g17000 40 935 IPR016688 -
Lcy8g1282 935 Gene3D - 759 808 IPR023408 -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 96 131 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 189 232 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 96 129 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 37 56 - -
Lcy8g1282 935 FunFam Predicted mechanosensitive ion channel 759 808 - -
Lcy8g1282 935 MobiDBLite consensus disorder prediction 260 277 - -
Lcy8g1282 935 SUPERFAMILY Sm-like ribonucleoproteins 749 808 IPR010920 -
Lcy8g1282 935 Pfam Mechanosensitive ion channel, beta-domain 752 809 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1282 K22048 - - csv:101210264 1547.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0518 Lcy-Chr13:6427292 Lcy8g1282 Lcy-Chr8:39424517 2.03E-167 dispersed
Lcy8g1282 Lcy-Chr8:39424517 Lcy9g1946 Lcy-Chr9:44456524 2.70E-149 dispersed
Lcy9g2295 Lcy-Chr9:47354698 Lcy8g1282 Lcy-Chr8:39424517 1.04E-210 transposed
Lcy3g0859 Lcy-Chr3:30985005 Lcy8g1282 Lcy-Chr8:39424517 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1988 . 849 1284 Mechanosensitive Ion Channel Family AT4G00290 62.8 2.0e-152 536.6
Lcy6g1111 . 93 801 Mechanosensitive Ion Channel Family AT5G10490 55.3 4.0e-193 672.2
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.5e-86 317.4
Lcy6g1111 . 122 769 Mechanosensitive Ion Channel Family AT1G58200 51.7 3.3e-166 582.8
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT1G58200 62.5 7.6e-99 359.0
Lcy8g1282 . 49 935 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.5e-267 919.1
Lcy3g0859 . 93 946 Mechanosensitive Ion Channel Family AT1G53470 51.7 7.1e-238 821.2
Lcy8g1282 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 53.7 2.0e-250 862.8
Lcy8g1282 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.8e-292 1001.9
Lcy3g0859 . 63 944 Mechanosensitive Ion Channel Family AT1G78610 57.1 8.0e-271 930.6
Lcy8g1282 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.2e-238 821.6
Lcy3g0859 . 273 943 Mechanosensitive Ion Channel Family AT2G17000 59.8 2.3e-225 779.6
Lcy8g1282 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 50.6 2.5e-163 573.2
Lcy9g1946 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 53.2 2.7e-182 636.3
Lcy2g0950 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 7.0e-199 691.4
Lcy9g1946 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 56.5 1.7e-197 686.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67