Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1305 ATGGCGGACGTGATGGTCATGCAAGAAATTGAGGACACAGCTGGTCGGCTTGGGATAGATCTTTCTCAAGTTGATTTTGAGTCCATTCGTCTTCCTCCGGGCGAGGATTTTGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCCGGGTTTGGAAACATTATAGTTGTAGATAATCTTCCAGTTGTTCCTCCGGAGAAGTACGAAAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGTGTAATCAAGGAAGATGGTCTGTGGATGCCTGTCGACCCTAGCACACAGAAAACTTTAGGGTATTGCTTTATTGAGTATGGCACTCCACAGGAGGCCGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACCGTTAACATGTTTGAGGACTTCGACCGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAACCCATATACTCCGGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAATGATGCTCGACATTTGAAGCCTGAACCTGTCTACAAGCGTCCATGGTCCCCCTTGGGGACTTACCTAGCAACGATTCACCGACAAGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCTACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGATAACTTACAGCAGCCATGAACCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTGAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCAATTGGAGGAACTGGCGGTGTTGCCGGCGTTTCTTGGCCTGTTTTTAGGTGGGGTGGCGGGAAAGACGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCGGTCTATGAAACAGAGACCTTCTCCCTTATTGACAAAAAATCTTTGAAAGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGATCCCATTATTGCACTCTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTTCAAATCCCCAGCAAGGAGGAGTTGAGGCAGAAAAATCTTTTCAGTGTCAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTGAAGGTTGATAGATATACGAAGACAAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCTATTGAAGTGTTGGAGCTCGAGAATAAGAACGACAAGATAATTGCATTTGCCTGGGAGCCAAAGGGGCATAGGTTTGCTGTTATTCATGGCGACAACCCAAGACCGGATATCAGCTTTTACTCTATGCGAAGCACCCACAACAGTGGCAGAGTATCAAAACTTACCACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGACGCTTCATTATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCAACTGCTGAACATTTCATGGCTACGGATATTGAATGGGATCCTACCGGAAGGTATGTTGCAACTGCTGTAACTTCAGTTCACGAGATGGAAAATGGTTTTAACATATGGTCCTTTAATGGAAAGCTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCTTGGCGCCCGAGGCCACCATCCTTCTTGAGTCCCGAGAAAGAGGAAGAGATAGCCAAGAATTTGAAGAAGTACAGCAAGAAGTATGAGGCTGAAGATCAGGATGTGTCTATGCTACTGAGCGAGCAAGATCGTGAGAAACGGAGAATGTTGAAGGATGAGTGGGAGAAGTGGGTTAATGAATGGAAGAGATTGCATGAAGAAGAGAAGCTGCTGCGGCAGAAACTGCGGGATGGCGAAGCCAGTGACGAGGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTTTGGATGTGTCAGAGGAAGTTTTGTCCTTCGATTTTGGGCAGGAATGA 2136 45.08 MADVMVMQEIEDTAGRLGIDLSQVDFESIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKYEKLEGVVRKIFGQIGVIKEDGLWMPVDPSTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHLQVKLIDFSPGEKYLITYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWEKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39727595 39732342 - Maker00000477 Lcy8g1305 640197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1305 711 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Lcy8g1305 711 Pfam RNA recognition motif 82 136 IPR000504 GO:0003723(InterPro)
Lcy8g1305 711 PIRSF Transl_init_eIF3b 7 705 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Lcy8g1305 711 SUPERFAMILY DPP6 N-terminal domain-like 211 592 - -
Lcy8g1305 711 CDD RRM_eIF3B 59 143 IPR034363 -
Lcy8g1305 711 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676(InterPro)
Lcy8g1305 711 Coils Coil 679 699 - -
Lcy8g1305 711 FunFam Eukaryotic translation initiation factor 3 subunit B 403 618 - -
Lcy8g1305 711 Pfam Eukaryotic translation initiation factor eIF2A 398 598 IPR013979 -
Lcy8g1305 711 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723(InterPro)
Lcy8g1305 711 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 30 700 IPR011400 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)
Lcy8g1305 711 SMART rrm1_1 61 143 IPR000504 GO:0003723(InterPro)
Lcy8g1305 711 Gene3D - 55 154 IPR012677 -
Lcy8g1305 711 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 705 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Lcy8g1305 711 Gene3D - 186 429 IPR015943 GO:0005515(InterPro)
Lcy8g1305 711 Gene3D - 430 616 IPR015943 GO:0005515(InterPro)
Lcy8g1305 711 FunFam Eukaryotic translation initiation factor 3 subunit B 181 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1305 Lcy-Chr8:39727595 Lcy8g1306 Lcy-Chr8:39735824 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1305 K03253 - csv:101213144 1399.03