Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1307 ATGGAGAGACAATTTGGAGCGAGAGTGACAGGAATTAACAATGGTTTTAGTCCATGTTCATCGATTTCTAACGGGGCTCGAGATGAAAACGGAGATGTGGTTAAGGATTTGATCGAAGCGAACGAATTAATCGAGACCATTGGGGGTTTTTCTGGGTTTCGCAAGACGCAATCGAAGGAGTGTTTGAATTTGGTTAGAAGATTGAAGATGCTCGTGCCGTTGCTGGAGGAGATTCGGGACCTTCACGATATGGTTCCTGCTGAGGCTCTGAGTAGCCATCTTGGTCTTTTAAAAGAGGCTCTTGTATTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTATCTGGCTTTTGAGAATGAGGCTGTGATGGCGAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATGCCTTATGATGAGCTTGGAGTCTCAGAAGAATTGAAAGAGCAAGTTGAGCTCATGTCTACGCAACTCAAAAGAGCAAAATGCCGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGATAGTATTTTCTAAAAACGATGAGAGAAATGCTGACCCTGTTATACTCGAAAGATTGGCAAATAAATTGGAACTACGTAAAATTGCAGACTTGGAAGCAGAGACCGAAGCTGTTCAAAAATTAGTTAGACGTAGAGGTGTAACGAATTCTGATAGCCTCCAGCAAATTTTAGACCTTCTGTGCAAGTTTAAACAAATTGCAGGTATGGACACTAAATTTGCTCTTGATGGTCCTGTTACATCGAAATGTCTGCAACGTTCTCGGTCTACAGTAATCCCTCATGAATTCCTCTGTCCAATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCAACTGGGCAGACTTATGACCGAGAAAGTATACAGAAGTGGTTGAATTCTAATCACCGAACCTGCCCCAAAACTGGACAAACCTTGATGCATTTGTCACTAGCTCCAAATTATGCTCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAGAATGACTATGAATTACCCAAAAAGGAAGCAGTTGCTGGATTGGTTGGCACTCCGCCCGAACTCGCTCAGGAAATCTCCTCTTTAGTCCACGATCTATCATCAAGGCAGTTGGACGTCCAAAGAGAGGCTATCATCAAGATCCGGGTCCTCTCCAAGGAGAACCCTGAGAACAGAGTTTGGATCGCGAATAGTGGAGTCATCCCTCCATTGGTTAAGCTTCTCTCCTACCCAGATCGCAATTTCCAAGAACACACCGTGACCGCCCTTTTGAACTTGTCTATCGACGAAGCAAATAAAAGACTCATAGCCAGAGAAGGAGCCATCCCTGCTATCATAGAGATCCTGCAGCAAGGAACAGAGGAGGCTAAGGAGAACTCTGCTGCTGCATTGTTTAGCTTGTCAATGTTAGATGAAAATAAGGTTCTTATTGGATCACTAAAGGGAATCCCGCCATTAGTAGCTCTTCTTCGAGACGGTACAATCCGAGGAAAGAAGGATGCTGCCACTGCACTCTTTAACCTGTCACTAAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGTATCGTACCGCCCCTTCTCTATTTACTTCAGGATAAGAGCTTAGGAATGATTGATGAAGCTTTATCAATCTTGTTACTCCTCGCATCACATCCCGAGGGACGGGCCGAGATCAGTAATAACTCCTTCATCGGAATTCTAGTGAACATCATAAGGGACGGGACTCCGAAGAACAAGGAATGTGCTACATCCTTACTCCTAGAGCTTGGACTAAACAATCCACCTTCCATCTTGGTTGCACTGCAATTTGGTGTATATGAACATCTGATAGAGGTCACAAGATGTGGGACAAGTAGAGCACAGAGAAAAGCAAACTCACTTTTGCAGTATATGATCAAGTGTGAACACATTCCCTGA 1956 43.87 MERQFGARVTGINNGFSPCSSISNGARDENGDVVKDLIEANELIETIGGFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAEALSSHLGLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGMPYDELGVSEELKEQVELMSTQLKRAKCRKDTQDMELAMDMMIVFSKNDERNADPVILERLANKLELRKIADLEAETEAVQKLVRRRGVTNSDSLQQILDLLCKFKQIAGMDTKFALDGPVTSKCLQRSRSTVIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLMHLSLAPNYALKNLILQWCQKNDYELPKKEAVAGLVGTPPELAQEISSLVHDLSSRQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDRNFQEHTVTALLNLSIDEANKRLIAREGAIPAIIEILQQGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVALLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIVPPLLYLLQDKSLGMIDEALSILLLLASHPEGRAEISNNSFIGILVNIIRDGTPKNKECATSLLLELGLNNPPSILVALQFGVYEHLIEVTRCGTSRAQRKANSLLQYMIKCEHIP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39757307 39761449 + Maker00000347 Lcy8g1307 640199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1307 651 CDD RING-Ubox_PUB 278 330 IPR045210 -
Lcy8g1307 651 CDD MLKL_NTD 59 167 - -
Lcy8g1307 651 Gene3D - 488 648 IPR011989 -
Lcy8g1307 651 Pfam U-box domain 277 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy8g1307 651 FunFam RING-type E3 ubiquitin transferase 30 147 - -
Lcy8g1307 651 Gene3D - 37 145 IPR036537 GO:0007166(InterPro)
Lcy8g1307 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
Lcy8g1307 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 452 494 IPR000225 GO:0005515(InterPro)
Lcy8g1307 651 SUPERFAMILY ARM repeat 371 645 IPR016024 -
Lcy8g1307 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 453 IPR000225 GO:0005515(InterPro)
Lcy8g1307 651 Pfam Armadillo/beta-catenin-like repeat 483 521 IPR000225 GO:0005515(InterPro)
Lcy8g1307 651 Pfam Armadillo/beta-catenin-like repeat 400 439 IPR000225 GO:0005515(InterPro)
Lcy8g1307 651 SMART arm_5 400 440 IPR000225 GO:0005515(InterPro)
Lcy8g1307 651 SMART arm_5 441 481 IPR000225 GO:0005515(InterPro)
Lcy8g1307 651 SMART arm_5 482 522 IPR000225 GO:0005515(InterPro)
Lcy8g1307 651 SMART arm_5 523 563 IPR000225 GO:0005515(InterPro)
Lcy8g1307 651 SUPERFAMILY RING/U-box 275 352 - -
Lcy8g1307 651 Gene3D - 370 487 IPR011989 -
Lcy8g1307 651 SMART Ubox_2 280 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy8g1307 651 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy8g1307 651 PANTHER U BOX DOMAIN-CONTAINING 55 644 - -
Lcy8g1307 651 FunFam RING-type E3 ubiquitin transferase 362 650 - -
Lcy8g1307 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515(InterPro)
Lcy8g1307 651 Coils Coil 152 172 - -
Lcy8g1307 651 FunFam RING-type E3 ubiquitin transferase 276 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0374 Lcy-Chr7:3169605 Lcy8g1307 Lcy-Chr8:39757307 1.67E-11 dispersed
Lcy7g0632 Lcy-Chr7:5781207 Lcy8g1307 Lcy-Chr8:39757307 4.28E-83 dispersed
Lcy8g1307 Lcy-Chr8:39757307 Lcy8g1815 Lcy-Chr8:44541024 4.44E-87 dispersed
Lcy8g1307 Lcy-Chr8:39757307 Lcy11g0195 Lcy-Chr11:2283176 4.41E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1307 - - - 0.0