Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1325 | ATGGAGGACCAGCGAGGTAAGCCTACAGACAAATGGATGGCATTTGACAGAGAATCAAACACGACAAACAGCCCTGGAAATGAAGCAAAAGAAGACAGAGAAAGCCGGCAATCTTCTTCCAAAAGGGCAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACAGACGTGGAAGAAGGCAGTTTCAAGGCCATAGTGGGGAGAGCATCAGGGGAAGGAGGGGGCAGCAAAAGGTCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTAGCAATGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTAGCCTCTTTGGAACAGACATTCGTTGTCTCTGATGCCACTAAACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGATAAAATTCGATATGCAGTGAAGCAAGGCAAAAGCTACTGCGGAAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAATGGCAAGACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCGTAAATGACAGAGCATTACGGCCGAACGGGTTGCCAAAGTCATTAATCCGCTATGATGCTCGCCAAAAGGAAAAGGCAATGGGTTCCATCACAGAGGTTGTCCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATGAGTCATGACATTAACAGGAAAAAAGAAGAGTTGGAGAAGTTCAATCTTGATTATGTTCTTCCAAAGTCAGCTGGAGCTGAAAATGATACACCGGGTAGACAAACTCCTCAACAGGACCTTAGAGATGATGGCTTAGGCAAGAAACCTAGGTTATCAAGTCGAGTTTCTTTAATGGGGTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCCTAGAACCAGAAATTTTGATGACCGATGAAATAGAGCGGACTGATAGTTGGGACCGTGCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCTGATAGCTTTCTTGAGTTGACAGAATATACACGTGAAGAAATTTTGGGCCGAAACTGCCGGTTTCTTCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACCGTTCAGTTGATCAACTATACCAAGACTGTTTACATCGGAGAGCTTCAGTATTTTATTGGTGTACAACTCGATGGAAGTGGTCATGTGGAACCTTTGCAAAACCGCCTTTCTGAGACGGCAGAGCAACAAAGTGCCATGCTGGTTAAAGCTACTGCAGAGAATGTTGATGAGGCTGTCCGGGAACTTCCTGATGCCAACTTGGTAAGATGTCGTAATTTAATTATCCAACTGCTTCTGTTTCAGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAGTTCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTGTTGAATCGGAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCGTTCGAGACCCGTACACACGTTTGTTTGATAACAGACTTTTGCTCTGGTGGGGAATTATTCGCATTGCTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGTAACAATGATTTTCGATTTCTTCGATGA | 2139 | 43.76 | MEDQRGKPTDKWMAFDRESNTTNSPGNEAKEDRESRQSSSKRAISTEANIAERAAEWGLVVETDVEEGSFKAIVGRASGEGGGSKRSSEKISGTGRTSSFSNESSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKQGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGKTIKFIGMQVEVSKYTEGVNDRALRPNGLPKSLIRYDARQKEKAMGSITEVVQTVKNPRSHNRAMSHDINRKKEELEKFNLDYVLPKSAGAENDTPGRQTPQQDLRDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTALEPEILMTDEIERTDSWDRAERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTVYIGELQYFIGVQLDGSGHVEPLQNRLSETAEQQSAMLVKATAENVDEAVRELPDANLVRCRNLIIQLLLFQRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETRTHVCLITDFCSGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGNNDFRFLR | 712 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 39988621 | 40002938 | - | Maker00000628 | Lcy8g1325 | 640217 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1325 | 712 | CDD | PAS | 138 | 227 | IPR000014 | - | |
Lcy8g1325 | 712 | FunFam | LOV domain-containing protein | 583 | 667 | - | - | |
Lcy8g1325 | 712 | SMART | pac_2 | 188 | 230 | IPR001610 | - | |
Lcy8g1325 | 712 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Lcy8g1325 | 712 | PANTHER | PROTEIN TWIN LOV 1 | 18 | 236 | - | GO:0005634(PANTHER) | |
Lcy8g1325 | 712 | NCBIfam | PAS domain S-box protein | 137 | 228 | IPR000014 | - | |
Lcy8g1325 | 712 | CDD | PAS | 398 | 478 | IPR000014 | - | |
Lcy8g1325 | 712 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 399 | 482 | IPR035965 | - | |
Lcy8g1325 | 712 | SMART | serkin_6 | 584 | 711 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g1325 | 712 | MobiDBLite | consensus disorder prediction | 85 | 106 | - | - | |
Lcy8g1325 | 712 | Gene3D | PAS domain | 125 | 296 | - | - | |
Lcy8g1325 | 712 | ProSiteProfiles | PAC domain profile. | 185 | 239 | IPR000700 | - | |
Lcy8g1325 | 712 | ProSiteProfiles | Protein kinase domain profile. | 584 | 712 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g1325 | 712 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 132 | 224 | IPR035965 | - | |
Lcy8g1325 | 712 | ProSiteProfiles | PAS repeat profile. | 111 | 184 | IPR000014 | - | |
Lcy8g1325 | 712 | MobiDBLite | consensus disorder prediction | 75 | 106 | - | - | |
Lcy8g1325 | 712 | ProSitePatterns | Protein kinases ATP-binding region signature. | 590 | 613 | IPR017441 | GO:0005524(InterPro) | |
Lcy8g1325 | 712 | Gene3D | Transferase(Phosphotransferase) domain 1 | 668 | 703 | - | - | |
Lcy8g1325 | 712 | FunFam | Putative LOV domain-containing protein | 125 | 281 | - | - | |
Lcy8g1325 | 712 | SUPERFAMILY | Protein kinase-like (PK-like) | 560 | 704 | IPR011009 | - | |
Lcy8g1325 | 712 | Pfam | PAS domain | 132 | 228 | IPR000014 | - | |
Lcy8g1325 | 712 | Pfam | PAS domain | 406 | 469 | IPR000014 | - | |
Lcy8g1325 | 712 | Gene3D | PAS domain | 372 | 522 | - | - | |
Lcy8g1325 | 712 | MobiDBLite | consensus disorder prediction | 302 | 330 | - | - | |
Lcy8g1325 | 712 | Pfam | Protein kinase domain | 587 | 702 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy8g1325 | 712 | Gene3D | Phosphorylase Kinase; domain 1 | 582 | 667 | - | - | |
Lcy8g1325 | 712 | ProSiteProfiles | PAS repeat profile. | 383 | 456 | IPR000014 | - | |
Lcy8g1325 | 712 | SMART | pas_2 | 385 | 454 | IPR000014 | - | |
Lcy8g1325 | 712 | SMART | pas_2 | 113 | 182 | IPR000014 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy8g1325 | Lcy-Chr8:39988621 | Lcy8g1859 | Lcy-Chr8:44891114 | 2.21E-253 | dispersed | |
Lcy7g0251 | Lcy-Chr7:2170576 | Lcy8g1325 | Lcy-Chr8:39988621 | 8.35E-49 | transposed | |
Lcy4g0413 | Lcy-Chr4:5030181 | Lcy8g1325 | Lcy-Chr8:39988621 | 2.33E-208 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66119 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g1325 | K20715 | - | csv:101215355 | 1229.54 |