Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1325 ATGGAGGACCAGCGAGGTAAGCCTACAGACAAATGGATGGCATTTGACAGAGAATCAAACACGACAAACAGCCCTGGAAATGAAGCAAAAGAAGACAGAGAAAGCCGGCAATCTTCTTCCAAAAGGGCAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACAGACGTGGAAGAAGGCAGTTTCAAGGCCATAGTGGGGAGAGCATCAGGGGAAGGAGGGGGCAGCAAAAGGTCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTAGCAATGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTAGCCTCTTTGGAACAGACATTCGTTGTCTCTGATGCCACTAAACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGATAAAATTCGATATGCAGTGAAGCAAGGCAAAAGCTACTGCGGAAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAATGGCAAGACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCGTAAATGACAGAGCATTACGGCCGAACGGGTTGCCAAAGTCATTAATCCGCTATGATGCTCGCCAAAAGGAAAAGGCAATGGGTTCCATCACAGAGGTTGTCCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATGAGTCATGACATTAACAGGAAAAAAGAAGAGTTGGAGAAGTTCAATCTTGATTATGTTCTTCCAAAGTCAGCTGGAGCTGAAAATGATACACCGGGTAGACAAACTCCTCAACAGGACCTTAGAGATGATGGCTTAGGCAAGAAACCTAGGTTATCAAGTCGAGTTTCTTTAATGGGGTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCCTAGAACCAGAAATTTTGATGACCGATGAAATAGAGCGGACTGATAGTTGGGACCGTGCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCTGATAGCTTTCTTGAGTTGACAGAATATACACGTGAAGAAATTTTGGGCCGAAACTGCCGGTTTCTTCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACCGTTCAGTTGATCAACTATACCAAGACTGTTTACATCGGAGAGCTTCAGTATTTTATTGGTGTACAACTCGATGGAAGTGGTCATGTGGAACCTTTGCAAAACCGCCTTTCTGAGACGGCAGAGCAACAAAGTGCCATGCTGGTTAAAGCTACTGCAGAGAATGTTGATGAGGCTGTCCGGGAACTTCCTGATGCCAACTTGGTAAGATGTCGTAATTTAATTATCCAACTGCTTCTGTTTCAGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAGTTCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTGTTGAATCGGAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCGTTCGAGACCCGTACACACGTTTGTTTGATAACAGACTTTTGCTCTGGTGGGGAATTATTCGCATTGCTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGTAACAATGATTTTCGATTTCTTCGATGA 2139 43.76 MEDQRGKPTDKWMAFDRESNTTNSPGNEAKEDRESRQSSSKRAISTEANIAERAAEWGLVVETDVEEGSFKAIVGRASGEGGGSKRSSEKISGTGRTSSFSNESSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKQGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGKTIKFIGMQVEVSKYTEGVNDRALRPNGLPKSLIRYDARQKEKAMGSITEVVQTVKNPRSHNRAMSHDINRKKEELEKFNLDYVLPKSAGAENDTPGRQTPQQDLRDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTALEPEILMTDEIERTDSWDRAERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTVYIGELQYFIGVQLDGSGHVEPLQNRLSETAEQQSAMLVKATAENVDEAVRELPDANLVRCRNLIIQLLLFQRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETRTHVCLITDFCSGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGNNDFRFLR 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39988621 40002938 - Maker00000628 Lcy8g1325 640217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1325 712 CDD PAS 138 227 IPR000014 -
Lcy8g1325 712 FunFam LOV domain-containing protein 583 667 - -
Lcy8g1325 712 SMART pac_2 188 230 IPR001610 -
Lcy8g1325 712 MobiDBLite consensus disorder prediction 1 48 - -
Lcy8g1325 712 PANTHER PROTEIN TWIN LOV 1 18 236 - GO:0005634(PANTHER)
Lcy8g1325 712 NCBIfam PAS domain S-box protein 137 228 IPR000014 -
Lcy8g1325 712 CDD PAS 398 478 IPR000014 -
Lcy8g1325 712 SUPERFAMILY PYP-like sensor domain (PAS domain) 399 482 IPR035965 -
Lcy8g1325 712 SMART serkin_6 584 711 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1325 712 MobiDBLite consensus disorder prediction 85 106 - -
Lcy8g1325 712 Gene3D PAS domain 125 296 - -
Lcy8g1325 712 ProSiteProfiles PAC domain profile. 185 239 IPR000700 -
Lcy8g1325 712 ProSiteProfiles Protein kinase domain profile. 584 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1325 712 SUPERFAMILY PYP-like sensor domain (PAS domain) 132 224 IPR035965 -
Lcy8g1325 712 ProSiteProfiles PAS repeat profile. 111 184 IPR000014 -
Lcy8g1325 712 MobiDBLite consensus disorder prediction 75 106 - -
Lcy8g1325 712 ProSitePatterns Protein kinases ATP-binding region signature. 590 613 IPR017441 GO:0005524(InterPro)
Lcy8g1325 712 Gene3D Transferase(Phosphotransferase) domain 1 668 703 - -
Lcy8g1325 712 FunFam Putative LOV domain-containing protein 125 281 - -
Lcy8g1325 712 SUPERFAMILY Protein kinase-like (PK-like) 560 704 IPR011009 -
Lcy8g1325 712 Pfam PAS domain 132 228 IPR000014 -
Lcy8g1325 712 Pfam PAS domain 406 469 IPR000014 -
Lcy8g1325 712 Gene3D PAS domain 372 522 - -
Lcy8g1325 712 MobiDBLite consensus disorder prediction 302 330 - -
Lcy8g1325 712 Pfam Protein kinase domain 587 702 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1325 712 Gene3D Phosphorylase Kinase; domain 1 582 667 - -
Lcy8g1325 712 ProSiteProfiles PAS repeat profile. 383 456 IPR000014 -
Lcy8g1325 712 SMART pas_2 385 454 IPR000014 -
Lcy8g1325 712 SMART pas_2 113 182 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1325 Lcy-Chr8:39988621 Lcy8g1859 Lcy-Chr8:44891114 2.21E-253 dispersed
Lcy7g0251 Lcy-Chr7:2170576 Lcy8g1325 Lcy-Chr8:39988621 8.35E-49 transposed
Lcy4g0413 Lcy-Chr4:5030181 Lcy8g1325 Lcy-Chr8:39988621 2.33E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66119 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1325 K20715 - csv:101215355 1229.54