Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1337 ATGGAAATTTGGCTGCCGTTGTGCCCTAACGTTATTACATGGATGGATTTAGGGGTAACGACAACAGGCAAGGCGTTGAAAGGCATTCCCACGCCGAGTATCATGAAGAACAGGGTATTTGGCAGCATTAAGATTGTCGTCTTCTCTGCTAAAATCAACTTGCTGATGCCTTTTGGGCCTTTAGCAATATTAGTCAGCAGTTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCCTGTTGGGGATCATACCCCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTTTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGTGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAATATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCTAAAAGGGAGCAGGTCTTCAGCAAGGCATCTGCTACTGTGAATTCTGGATTGCTGTTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGGTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCTGCATTATGTTGGTGGCATATGCAGCCTATCTTGTTTTTCAGTTGAAAAGCGATAGGAACTTATATCTCCCAGTTGATGAGGTTGATAGCTCTGCTTTCATACTTGATATAAACAGCATAAACAATCTTACATTCTATTTACTAGTGGATACTGAAGGGAATTCTGATGATGAAGAAGATCCTGAGATTTCCATGTGGGAATCCATTGTTTGGCTGTCTATCTTGACCATTTGGATCTCCGTCCTCTCCGAATACTTAGTTAATGCAATAGAGGGGGCATCGGTTGCCATGAACATACCAGTAGCATTCATTAGTGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAACATGCTGGTGCCATCATGTTTGCCATGAAAGACAAGCTAGACATTTCGTTGGGAGTTGCAATAGGATCATCTACACAGATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAACTTTCAACTTTTTGAGACCGCCACGCTATTCATCACGGTTATTGTTGTGGCCTTCATGTTGCAGGATGGAACTTCTAATTACCTCAAAGGGCTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCTTTAGTTGGCAAGGGACGACTCGGAGTGGTGAATCTGCCTGCAGAGGGGCCTCTTCAACCTAGTACTCTTCTAAAGATGGGATCGACCGAAGCTCGAGGTTCACTCCATTGCTGTATAGTTCTGAACTCGGGCTCTACCATGTTCAGAAAGCATTTTTCCATGTTTTGTGACAATCAATGGCAATAG 1479 42.87 MEIWLPLCPNVITWMDLGVTTTGKALKGIPTPSIMKNRVFGSIKIVVFSAKINLLMPFGPLAILVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKASATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSCIMLVAYAAYLVFQLKSDRNLYLPVDEVDSSAFILDINSINNLTFYLLVDTEGNSDDEEDPEISMWESIVWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPALVGKGRLGVVNLPAEGPLQPSTLLKMGSTEARGSLHCCIVLNSGSTMFRKHFSMFCDNQWQ 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40122536 40129261 - Maker00000731 Lcy8g1337 640229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1337 492 FunFam Vacuolar cation/proton exchanger 270 426 - -
Lcy8g1337 492 Gene3D - 102 249 IPR044880 -
Lcy8g1337 492 Gene3D - 257 426 IPR044880 -
Lcy8g1337 492 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 33 430 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Lcy8g1337 492 FunFam Vacuolar cation/proton exchanger 103 242 - -
Lcy8g1337 492 Pfam Sodium/calcium exchanger protein 282 424 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1337 492 Pfam Sodium/calcium exchanger protein 73 229 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy8g1337 492 NCBIfam calcium/proton exchanger 56 425 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0088 Lcy-Chr13:892775 Lcy8g1337 Lcy-Chr8:40122536 1.56E-166 dispersed
Lcy1g1557 Lcy-Chr1:15454261 Lcy8g1337 Lcy-Chr8:40122536 5.35E-99 dispersed
Lcy8g1337 Lcy-Chr8:40122536 Lcy5g0112 Lcy-Chr5:1155959 2.26E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1337 K07300 - csv:101215915 699.893