Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1342 ATGGGTTACATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTTCACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCATGTGATCGTAATGTCCACTCAGCTAACGCCCTTTCAAGGCGCCATACAAGAACGCTCTTGTGTGAAAGATGCCATTTGCAACCTGCCACAGTAAGATGTATTGAAGAGAGGCTTTCTCTGTGTCATAATTGTGACTGGACAGGTCATGGCACATCTACCTCTGCTCCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAGCTTTCTTCAATCTGGTCTTTTGTTTTGGATGTGCCCTCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACCGACTTGACGGGTGCCTGGAGCCCTTCAGAGAACGACAAAAGTCAAAGAATGCCTGGTGTTTGCATCAGGGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTTACTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTACTATGTCTTCACCCAAGGATCTTTTGAAGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGCGGTAATGATGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGAACTTTTCGAGAACGGTGGAATTGATAGCCTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGGTCTTCCGTCGGAGTTGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGACTCAATGATGAGTACCAAAACCGAACCGATCCTCTGTTTTAATTCAAGGCAAGCACAATCGGGTGTGTCATTTTCTGGCCTTACTGGCGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGAGAGCCTCCATGGTGTGCCCCTGGCACTGAAAGTTCATTCCCATCTTCTGATCGCAACAATGCGGTTCTACGTTACAAGGAGAAAAAGAAGACACGCAAGTTTGAGAAAAGAGTGAGATATGCAACGCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGCTTTGTGAAGGCTGGAGAGGCCTATGATTATGACCCGCTGAACCAGACTAGAAGCTGCTGA 1269 45.55 MGYMCDFCGDQRSMVHCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPATVRCIEERLSLCHNCDWTGHGTSTSAPSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKELGLMSIAETDLTGAWSPSENDKSQRMPGVCIREKSNVLVGSSSLTDFGSRPHTSDQPVELATMSSPKDLLKHHIFGMQFCCPGTKVAEFCGNDDDLYKEFDMDEMDLNLENYEELFGMSLNHSEELFENGGIDSLFEAKGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSMMSTKTEPILCFNSRQAQSGVSFSGLTGESSAGDYQDCGASSMLLMGEPPWCAPGTESSFPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQTRSC 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40181760 40186506 + Maker00001328 Lcy8g1342 640234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1342 422 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy8g1342 422 ProSiteProfiles CCT domain profile. 365 407 IPR010402 GO:0005515(InterPro)
Lcy8g1342 422 Pfam CCT motif 365 407 IPR010402 GO:0005515(InterPro)
Lcy8g1342 422 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 412 - -
Lcy8g1342 422 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270(InterPro)
Lcy8g1342 422 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lcy8g1342 422 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy8g1342 422 CDD Bbox1_BBX-like 47 91 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1068 Lcy-Chr11:32188225 Lcy8g1342 Lcy-Chr8:40181760 1.07E-16 dispersed
Lcy4g1612 Lcy-Chr4:40807398 Lcy8g1342 Lcy-Chr8:40181760 8.28E-07 dispersed
Lcy4g1662 Lcy-Chr4:41924170 Lcy8g1342 Lcy-Chr8:40181760 8.54E-10 dispersed
Lcy8g1342 Lcy-Chr8:40181760 Lcy8g1457 Lcy-Chr8:41238744 3.12E-53 dispersed
Lcy7g0505 Lcy-Chr7:4482932 Lcy8g1342 Lcy-Chr8:40181760 3.76E-15 transposed
Lcy4g0405 Lcy-Chr4:4954323 Lcy8g1342 Lcy-Chr8:40181760 4.03E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20517 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1342 - - - 0.0