Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy8g1343 | ATGATAATTCTCTCTTCTTCTCATCATTCCACGGCAAAAGCCTCACTGGTCTTGAAGGTTGGGGGTGGGGGGTTTTTGGGAACTGGATTGATCCCTTTGCATCATTGGTGTTCTTCTGATGGGATTTTGATCACTTTCTCAAACGTTCTGAATCGTTTCTGGAAGACTTTTTGTACTTGGATTAAAATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGAGTGATCCTTGTAAATACAGCGCTATCAATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGTCACCTGCATTACCATCGACACCAGATTCCATGGAGAATGCACCTGAATCTATAGAATTCCGTATCAACCCGAATGGAAGTTACATCGAAGAGTTCCGTAGTCGCATCCCAGCAATTCTGTTCGACAAAGTTCGAAGCTGCAAATGGCTCGAACACGACTGCTCAGTCTGCCTAACCCAGTTCGAACCTGAATCAGAGATAAACCATTTATCTTGCGGCCATCTTTTCCACAGGGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGCCCGCTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCTTCCTGCTTCTGGTGA | 651 | 46.85 | MIILSSSHHSTAKASLVLKVGGGGFLGTGLIPLHHWCSSDGILITFSNVLNRFWKTFCTWIKMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPALPSTPDSMENAPESIEFRINPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW | 216 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 40199244 | 40200701 | + | Maker00000588 | Lcy8g1343 | 640235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy8g1343 | 216 | PANTHER | - | 63 | 216 | IPR044249 | - | |
| Lcy8g1343 | 216 | SUPERFAMILY | RING/U-box | 149 | 208 | - | - | |
| Lcy8g1343 | 216 | Pfam | Ring finger domain | 159 | 202 | IPR001841 | - | |
| Lcy8g1343 | 216 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 207 | IPR013083 | - | |
| Lcy8g1343 | 216 | ProSiteProfiles | Zinc finger RING-type profile. | 160 | 202 | IPR001841 | - | |
| Lcy8g1343 | 216 | SMART | ring_2 | 160 | 201 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy8g1343 | Lcy-Chr8:40199244 | Lcy11g0184 | Lcy-Chr11:2098565 | 1.08E-06 | dispersed | |
| Lcy8g1343 | Lcy-Chr8:40199244 | Lcy13g0728 | Lcy-Chr13:10926394 | 7.83E-17 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy8g1343 | K16285 | - | csv:101216645 | 313.923 |