Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1350 ATGGCGGATTCGGATAACGAGTCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGACGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCAGCGAACGCGAAGATCTCAAAAGATGCGAAAGAAACGGTACAAGAGTGCGTGTCGGAGTTCATAAGCTTCATAACGGGAGAGGCGTCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTGGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGAAGACAAGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGGGCTAATGGTGGTGGAGGAGTCAACCCTGGTACTGGTGGTGGTGCCGGCGGCGGCGGATATAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGTGTTTATGGCGGTGGAGGATTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG 612 56.05 MADSDNESGGHNSNANSELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGANGGGGVNPGTGGGAGGGGYNGVGGMYGGMMMMGHHQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40251945 40252556 - Maker00000575 Lcy8g1350 640242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1350 203 Gene3D Histone, subunit A 14 131 IPR009072 GO:0046982(InterPro)
Lcy8g1350 203 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1350 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 127 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lcy8g1350 203 MobiDBLite consensus disorder prediction 114 146 - -
Lcy8g1350 203 SUPERFAMILY Histone-fold 24 126 IPR009072 GO:0046982(InterPro)
Lcy8g1350 203 FunFam Nuclear transcription factor Y subunit B-3 16 135 - -
Lcy8g1350 203 MobiDBLite consensus disorder prediction 1 23 - -
Lcy8g1350 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Lcy8g1350 203 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Lcy8g1350 203 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Lcy8g1350 203 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Lcy8g1350 203 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1350 K08065 - - csv:101219076 254.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0258 Lcy-Chr5:2441316 Lcy8g1350 Lcy-Chr8:40251945 8.88E-52 dispersed
Lcy6g1821 Lcy-Chr6:37371827 Lcy8g1350 Lcy-Chr8:40251945 4.57E-40 dispersed
Lcy7g0811 Lcy-Chr7:7893024 Lcy8g1350 Lcy-Chr8:40251945 1.67E-52 dispersed
Lcy8g1350 Lcy-Chr8:40251945 Lcy6g1843 Lcy-Chr6:38144011 3.32E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1821 . 159 259 CCAAT-HAP3 Transcription Factor Family AT5G47670 85.1 6.8e-47 184.9
Lcy8g1350 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 9.9e-38 154.5
Lcy6g1821 . 156 283 CCAAT-HAP3 Transcription Factor Family AT1G21970 70.1 3.3e-49 192.6
Lcy8g1350 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.9 1.3e-57 219.9
Lcy6g1843 . 1 149 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.3 3.2e-51 198.7
Lcy7g0811 . 108 212 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.0 1.1e-43 173.7
Lcy5g0258 . 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.0 1.0e-41 167.2
Lcy7g0811 . 102 215 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.5 5.3e-48 188.0
Lcy5g0258 . 1 154 CCAAT-HAP3 Transcription Factor Family AT2G38880 63.0 7.6e-47 184.1
Lcy8g1350 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.9e-42 169.5
Lcy6g1843 . 1 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.3 2.5e-42 169.1
Lcy3g1707 . 41 143 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.7 1.9e-40 162.9
Lcy6g1843 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.1 3.3e-40 162.2
Lcy8g1350 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 8.0e-39 157.5
Lcy5g0258 . 7 195 CCAAT-HAP3 Transcription Factor Family AT2G37060 62.0 9.5e-54 207.2
Lcy7g0811 . 105 256 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.1 1.8e-52 203.0
Lcy8g1350 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.8e-44 176.4
Lcy6g1843 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.4e-43 172.2
Lcy8g1350 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 5.0e-44 175.3
Lcy6g1843 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 4.7e-42 168.7
Lcy7g0811 . 121 211 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.9 6.3e-39 158.3
Lcy5g0258 . 7 124 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.0 8.2e-39 157.9
Lcy8g1350 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 7.5e-52 201.1
Lcy6g1843 . 1 119 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.8 7.8e-49 191.0
Lcy7g0811 . 104 212 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.5 9.2e-42 167.5
Lcy5g0258 . 11 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.6 6.6e-40 161.4
Lcy7g0811 . 106 245 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.9 1.8e-52 203.0
Lcy5g0258 . 12 195 CCAAT-HAP3 Transcription Factor Family AT3G53340 57.6 1.7e-50 196.4
Lcy8g1350 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 3.7e-45 178.7
Lcy6g1843 . 6 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 3.1e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20518 None None None None Lcy TF