Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1350 ATGGCGGATTCGGATAACGAGTCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGACGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCAGCGAACGCGAAGATCTCAAAAGATGCGAAAGAAACGGTACAAGAGTGCGTGTCGGAGTTCATAAGCTTCATAACGGGAGAGGCGTCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTGGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGAAGACAAGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGGGCTAATGGTGGTGGAGGAGTCAACCCTGGTACTGGTGGTGGTGCCGGCGGCGGCGGATATAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGTGTTTATGGCGGTGGAGGATTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG 612 56.05 MADSDNESGGHNSNANSELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGANGGGGVNPGTGGGAGGGGYNGVGGMYGGMMMMGHHQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40251945 40252556 - Maker00000575 Lcy8g1350 640242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1350 203 Gene3D Histone, subunit A 14 131 IPR009072 GO:0046982(InterPro)
Lcy8g1350 203 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy8g1350 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 127 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lcy8g1350 203 MobiDBLite consensus disorder prediction 114 146 - -
Lcy8g1350 203 SUPERFAMILY Histone-fold 24 126 IPR009072 GO:0046982(InterPro)
Lcy8g1350 203 FunFam Nuclear transcription factor Y subunit B-3 16 135 - -
Lcy8g1350 203 MobiDBLite consensus disorder prediction 1 23 - -
Lcy8g1350 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Lcy8g1350 203 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Lcy8g1350 203 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Lcy8g1350 203 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Lcy8g1350 203 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0258 Lcy-Chr5:2441316 Lcy8g1350 Lcy-Chr8:40251945 8.88E-52 dispersed
Lcy6g1821 Lcy-Chr6:37371827 Lcy8g1350 Lcy-Chr8:40251945 4.57E-40 dispersed
Lcy7g0811 Lcy-Chr7:7893024 Lcy8g1350 Lcy-Chr8:40251945 1.67E-52 dispersed
Lcy8g1350 Lcy-Chr8:40251945 Lcy6g1843 Lcy-Chr6:38144011 3.32E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20518 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1350 K08065 - csv:101219076 254.218