Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy8g1364 | ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCTCGAGGTGCTTACTGAGGATGTCTTTGAGCTGCAAGTTTTCTACCTCTAATGGAAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCTAAGGAACATCTGTGTTTGTTAAATTCCACTGGGAAGTGGAAGAAGAAGCTTCTCTGTCTTTGGATTTTTGCTGTAGTTATAGTTTTGAGCAGTTGGTTTTCCTTGCGTTCGAATAATGTGAATAGTGGAACAAAACAGAAGACCTCGAACTTGTTCGATGAAGAAACTCGAACTTTGCTGCGGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTGTCCGAATCAGATCGGATGTCATCCATCGGGTGCACCAACGATTTTGGATCTGACACATCACAGTTGGATGGAATTGCCTGTGCCCTGAGGTTACTGTACTGGGAGCAAGATTTGCACAAGCAGTATGTATGGGTTGGAGAGAGTGCAGATTCCAATTTTGGGCAGTGCCCAATTCGAACTGAGAAGATCCCTGAAAATTCTGACCAATTATTCTCTGAGGACGTAACTGTTCCATTTGCTACAGACTTATCCGTCTCTTTACTTTCTACTGGAAATCAGCTTTGTGGAAAGATAATTGAACAAGCAGGAGTGCTACGATACTCTTTAAGAAAGCAGTGGATGAATTTCTGTAGTTTGTTGATTGGATGTTTTTGGGTTCTCCTTGGAGTGATGGTGTTCCAGAAAAGATCTGGTTTCCTTGTAAAATTGTGGACCAGGATACATCCAAAGCCAAATCAACCATTGGCTCATCAACAGTGGGTCTTACTGCGGAGAAAACAGCATCAACAAGTCAAAGATTCTCCTAAAGGAGCCGGGAAATGGCGGAAGGTGCTCCTGAGAATATTTATTGTAGTTGGGATCATCGGGTCCATTTGGTTATTTTGGTTCCTGAACCAGACAGCCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACCTTCCACCATGGAAAACAACCTTCTGCCATTGATCAGGCAATGCTCTTTCTGTTTGCCATTTGTCTTGTCTCTCCTCTGTTATACAATTTCTATACTATTAAAACATTTGGTGAGTATACAGAAAGAACATCCTTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAGCAATTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTGACCCAGAAAATTTGGAGCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTTGCGCATATAGTTTCTATAGATATGATGTCTGGAAAAGAAGATCGGGAGAACATATTGCGAGCTAGAGCTTCTGGAAAGGGAGTCCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACATTCGCTGTCTATAACACTGACCTCCCACCAGATGCTACTCCTGAGCAACGTATTGAAGCTACTGTTGGTTATCTAGGTGCATCTTATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACGACCAATGATTCTGCTCCCATCAACATGTATGGTTCTGATTTTACTGATACTGGGCTACTGCATATTAGTAAACTTGATTTTGGCGATCCATTAAGAAGGCATGAGATGCATTGTAGATTTAAGCATAAACCTCCACCTCCTTGGACAGCTATCAATTCATCAGTAGGCGTCCTAATCATTACCTTGCTCGTTGGCCATATTTTTCGTGCGGCCATAAGTCGAATTGCAAAAGTGGAGGATGACTATCACAAGATGATGTGGCTTAAAAGTCGTGCCGAAGCTGCCGATGTGGCAAAATCGCAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAATTACTGATGGACACTAACCTTGATTCGAATCAACTGGATTTTGCCCAGACTGCTCATGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTACCTTTCGATCTGCGTGCTATACTTGACAATGTTCTCTCACCTTTTTCACTCAAATCCAATGATAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAATTGTGATTGGTGACCCCGGACGCTTTCGTCAAATAATTACTCATCTGGTTGGAAATTCAGTCAAGTTTACTCATAAAAAGGGACACATATTAATCTCAGTGCATCTGGCTGATGAAGTGAGAGGCCCAGTTGATTTTATGGACATTGTGCTTAGACAAGGCAAATATGTTGTTAGAGATGCATCGAACAATAGTTGTACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAGGACTTCAAAAAGTTCAGCGGGACGGATGCAGTGGAGGAACCCAAAATGATTAGAATACTCGTGACTGTTGAGGATACAGGCATAGGAATTCCCCAAAAAGCGCAAAGCCGAATATTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCTCGGACGTATGGTGGTACTGGAATAGGATTGAGTATTAGCAAACGGTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATAGGTAGCACATTTTCATTTACGGTTTCTTTCCAGAAAGGGGAAATAAGTTTTCTGGATACCAGACGGCTGCAGTCTGATCTGGGTATTGTGGAGTTCCAGGGTCTAAGAGCATTAATAATTGATAATAGCTGCATTCGAGCAGAGGTCACGAGATATCATCTGCAGAGGCTGGGGATTTCTGTTGATATAGCTCTGAGTGCAGAATCTGCTTATCAATATCTATCCAATACTTCCAACACAAGAGCATCGACACAATTGGCGATGATTCTTATAGATGAAGATATTTGGGACAAGAAAGTGGGTCTCAAGTTCCATCTTTTGTTTAAAGAGCACGTGGATAAAAGTGTGACAAATGTCCAGATGAATACTCCAAAGCTCTTTCTCTTGACAACCCCCAGTAGCTCCAATGAGCAAAATGAACTTAAATCTTCTGGTCATGTAAATAACATATTAAAAAAACCTCTTCAGTTAAATGTGTTAGTTAGTTGCTTCCGCGAAGCCTTTGGGATCGAGAAGAGGAATCAAGTAATTATTAAAAGACCATCTACTCTTAGGAATCTTCTGAAAGAAAAGCATATTTTGGTTGTGGATGACAATGCGGTGAACAGAATGGTGGCAGAAGGTGCCCTAAAGAAATATGGAGCAGTTGTAACTTGTGTAAAAAGTGGAAAGGATGCTGTGGCTCTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTAGAAAGTGGGGTGAATGCGAAAATTACATCTGGAGAAGTGTCAACTGAGGACAATAAAGTCCATTGGCACACGCCAATATTTGCCATGACGGCAGATTTAATTCAGGCTATGAATGAAGAGTGCGTGAAGTGTGGGATGGATGGTAGACTCAAATGTTATGATTTGCCAAAATCACTGAATGTGAATCCTGATGACTTTTCATCTCCTCCGAGATGGCTTATCGAAATCCTCTATCAGGGGTTTCGAGAC | 3885 | 41.98 | MWRGCSGGAGVFLKLSRCLLRMSLSCKFSTSNGKFPAGFKLKKAKEHLCLLNSTGKWKKKLLCLWIFAVVIVLSSWFSLRSNNVNSGTKQKTSNLFDEETRTLLRHFNVSKNQLQALASLLSESDRMSSIGCTNDFGSDTSQLDGIACALRLLYWEQDLHKQYVWVGESADSNFGQCPIRTEKIPENSDQLFSEDVTVPFATDLSVSLLSTGNQLCGKIIEQAGVLRYSLRKQWMNFCSLLIGCFWVLLGVMVFQKRSGFLVKLWTRIHPKPNQPLAHQQWVLLRRKQHQQVKDSPKGAGKWRKVLLRIFIVVGIIGSIWLFWFLNQTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQAMLFLFAICLVSPLLYNFYTIKTFGEYTERTSFERPLTSGVAYALKVNHSEREQFEMMHGWTIKKMETEDQTLVQDCDPENLEPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFRAAISRIAKVEDDYHKMMWLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSNQLDFAQTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAILDNVLSPFSLKSNDKGIELAVYVSDLVPEIVIGDPGRFRQIITHLVGNSVKFTHKKGHILISVHLADEVRGPVDFMDIVLRQGKYVVRDASNNSCTTFSGLPVVDRWKSWEDFKKFSGTDAVEEPKMIRILVTVEDTGIGIPQKAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGEISFLDTRRLQSDLGIVEFQGLRALIIDNSCIRAEVTRYHLQRLGISVDIALSAESAYQYLSNTSNTRASTQLAMILIDEDIWDKKVGLKFHLLFKEHVDKSVTNVQMNTPKLFLLTTPSSSNEQNELKSSGHVNNILKKPLQLNVLVSCFREAFGIEKRNQVIIKRPSTLRNLLKEKHILVVDDNAVNRMVAEGALKKYGAVVTCVKSGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVESGVNAKITSGEVSTEDNKVHWHTPIFAMTADLIQAMNEECVKCGMDGRLKCYDLPKSLNVNPDDFSSPPRWLIEILYQGFRD | 1295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 40370520 | 40381257 | + | Maker00000313 | Lcy8g1364 | 640256 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy8g1364 | 1295 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 667 | 746 | IPR036097 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Lcy8g1364 | 1295 | Gene3D | - | 744 | 966 | IPR036890 | - | |
Lcy8g1364 | 1295 | FunFam | Histidine kinase 4 | 400 | 626 | - | - | |
Lcy8g1364 | 1295 | Gene3D | - | 82 | 126 | - | - | |
Lcy8g1364 | 1295 | Gene3D | - | 325 | 377 | - | - | |
Lcy8g1364 | 1295 | CDD | HisKA | 680 | 741 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Lcy8g1364 | 1295 | SUPERFAMILY | CheY-like | 1141 | 1262 | IPR011006 | - | |
Lcy8g1364 | 1295 | ProSiteProfiles | Response regulatory domain profile. | 988 | 1120 | IPR001789 | GO:0000160(InterPro) | |
Lcy8g1364 | 1295 | SMART | HKATPase_4 | 792 | 964 | IPR003594 | - | |
Lcy8g1364 | 1295 | Pfam | His Kinase A (phospho-acceptor) domain | 680 | 745 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Lcy8g1364 | 1295 | Gene3D | - | 1127 | 1271 | - | - | |
Lcy8g1364 | 1295 | ProSiteProfiles | Response regulatory domain profile. | 1144 | 1279 | IPR001789 | GO:0000160(InterPro) | |
Lcy8g1364 | 1295 | FunFam | Histidine kinase 4 | 652 | 743 | - | - | |
Lcy8g1364 | 1295 | Pfam | CHASE domain | 402 | 592 | IPR006189 | - | |
Lcy8g1364 | 1295 | Gene3D | - | 983 | 1126 | - | - | |
Lcy8g1364 | 1295 | CDD | HATPase_EvgS-ArcB-TorS-like | 797 | 960 | - | - | |
Lcy8g1364 | 1295 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 301 | 1260 | IPR050956 | - | |
Lcy8g1364 | 1295 | Gene3D | - | 649 | 743 | - | - | |
Lcy8g1364 | 1295 | ProSiteProfiles | CHASE domain profile. | 402 | 619 | IPR006189 | - | |
Lcy8g1364 | 1295 | PRINTS | Bacterial sensor protein C-terminal signature | 948 | 961 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Lcy8g1364 | 1295 | PRINTS | Bacterial sensor protein C-terminal signature | 889 | 903 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Lcy8g1364 | 1295 | PRINTS | Bacterial sensor protein C-terminal signature | 907 | 917 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Lcy8g1364 | 1295 | PRINTS | Bacterial sensor protein C-terminal signature | 924 | 942 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Lcy8g1364 | 1295 | SMART | CHASE_2 | 404 | 594 | IPR006189 | - | |
Lcy8g1364 | 1295 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 888 | 962 | IPR003594 | - | |
Lcy8g1364 | 1295 | SMART | HisKA_10 | 680 | 745 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Lcy8g1364 | 1295 | SMART | REC_2 | 1143 | 1271 | IPR001789 | GO:0000160(InterPro) | |
Lcy8g1364 | 1295 | CDD | REC_hyHK_CKI1_RcsC-like | 1145 | 1262 | - | - | |
Lcy8g1364 | 1295 | SUPERFAMILY | CheY-like | 983 | 1120 | IPR011006 | - | |
Lcy8g1364 | 1295 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 734 | 960 | IPR036890 | - | |
Lcy8g1364 | 1295 | Pfam | Response regulator receiver domain | 1145 | 1226 | IPR001789 | GO:0000160(InterPro) | |
Lcy8g1364 | 1295 | Gene3D | CHASE domain | 401 | 626 | IPR042240 | - | |
Lcy8g1364 | 1295 | ProSiteProfiles | Histidine kinase domain profile. | 687 | 964 | IPR005467 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g2314 | Lcy-Chr6:47924324 | Lcy8g1364 | Lcy-Chr8:40370520 | 1.98E-23 | dispersed | |
Lcy7g1375 | Lcy-Chr7:20450681 | Lcy8g1364 | Lcy-Chr8:40370520 | 2.95E-306 | dispersed | |
Lcy11g1336 | Lcy-Chr11:37022952 | Lcy8g1364 | Lcy-Chr8:40370520 | 1.02E-06 | transposed | |
Lcy3g1254 | Lcy-Chr3:38292846 | Lcy8g1364 | Lcy-Chr8:40370520 | 0 | transposed | |
Lcy4g0365 | Lcy-Chr4:4591200 | Lcy8g1364 | Lcy-Chr8:40370520 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20520 | None | None | None | None | Lcy | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy8g1364 | K14489 | - | csv:101221294 | 2175.21 |