Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1364 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCTCGAGGTGCTTACTGAGGATGTCTTTGAGCTGCAAGTTTTCTACCTCTAATGGAAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCTAAGGAACATCTGTGTTTGTTAAATTCCACTGGGAAGTGGAAGAAGAAGCTTCTCTGTCTTTGGATTTTTGCTGTAGTTATAGTTTTGAGCAGTTGGTTTTCCTTGCGTTCGAATAATGTGAATAGTGGAACAAAACAGAAGACCTCGAACTTGTTCGATGAAGAAACTCGAACTTTGCTGCGGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTGTCCGAATCAGATCGGATGTCATCCATCGGGTGCACCAACGATTTTGGATCTGACACATCACAGTTGGATGGAATTGCCTGTGCCCTGAGGTTACTGTACTGGGAGCAAGATTTGCACAAGCAGTATGTATGGGTTGGAGAGAGTGCAGATTCCAATTTTGGGCAGTGCCCAATTCGAACTGAGAAGATCCCTGAAAATTCTGACCAATTATTCTCTGAGGACGTAACTGTTCCATTTGCTACAGACTTATCCGTCTCTTTACTTTCTACTGGAAATCAGCTTTGTGGAAAGATAATTGAACAAGCAGGAGTGCTACGATACTCTTTAAGAAAGCAGTGGATGAATTTCTGTAGTTTGTTGATTGGATGTTTTTGGGTTCTCCTTGGAGTGATGGTGTTCCAGAAAAGATCTGGTTTCCTTGTAAAATTGTGGACCAGGATACATCCAAAGCCAAATCAACCATTGGCTCATCAACAGTGGGTCTTACTGCGGAGAAAACAGCATCAACAAGTCAAAGATTCTCCTAAAGGAGCCGGGAAATGGCGGAAGGTGCTCCTGAGAATATTTATTGTAGTTGGGATCATCGGGTCCATTTGGTTATTTTGGTTCCTGAACCAGACAGCCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACCTTCCACCATGGAAAACAACCTTCTGCCATTGATCAGGCAATGCTCTTTCTGTTTGCCATTTGTCTTGTCTCTCCTCTGTTATACAATTTCTATACTATTAAAACATTTGGTGAGTATACAGAAAGAACATCCTTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAGCAATTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTGACCCAGAAAATTTGGAGCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTTGCGCATATAGTTTCTATAGATATGATGTCTGGAAAAGAAGATCGGGAGAACATATTGCGAGCTAGAGCTTCTGGAAAGGGAGTCCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACATTCGCTGTCTATAACACTGACCTCCCACCAGATGCTACTCCTGAGCAACGTATTGAAGCTACTGTTGGTTATCTAGGTGCATCTTATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACGACCAATGATTCTGCTCCCATCAACATGTATGGTTCTGATTTTACTGATACTGGGCTACTGCATATTAGTAAACTTGATTTTGGCGATCCATTAAGAAGGCATGAGATGCATTGTAGATTTAAGCATAAACCTCCACCTCCTTGGACAGCTATCAATTCATCAGTAGGCGTCCTAATCATTACCTTGCTCGTTGGCCATATTTTTCGTGCGGCCATAAGTCGAATTGCAAAAGTGGAGGATGACTATCACAAGATGATGTGGCTTAAAAGTCGTGCCGAAGCTGCCGATGTGGCAAAATCGCAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAATTACTGATGGACACTAACCTTGATTCGAATCAACTGGATTTTGCCCAGACTGCTCATGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTACCTTTCGATCTGCGTGCTATACTTGACAATGTTCTCTCACCTTTTTCACTCAAATCCAATGATAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAATTGTGATTGGTGACCCCGGACGCTTTCGTCAAATAATTACTCATCTGGTTGGAAATTCAGTCAAGTTTACTCATAAAAAGGGACACATATTAATCTCAGTGCATCTGGCTGATGAAGTGAGAGGCCCAGTTGATTTTATGGACATTGTGCTTAGACAAGGCAAATATGTTGTTAGAGATGCATCGAACAATAGTTGTACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAGGACTTCAAAAAGTTCAGCGGGACGGATGCAGTGGAGGAACCCAAAATGATTAGAATACTCGTGACTGTTGAGGATACAGGCATAGGAATTCCCCAAAAAGCGCAAAGCCGAATATTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCTCGGACGTATGGTGGTACTGGAATAGGATTGAGTATTAGCAAACGGTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATAGGTAGCACATTTTCATTTACGGTTTCTTTCCAGAAAGGGGAAATAAGTTTTCTGGATACCAGACGGCTGCAGTCTGATCTGGGTATTGTGGAGTTCCAGGGTCTAAGAGCATTAATAATTGATAATAGCTGCATTCGAGCAGAGGTCACGAGATATCATCTGCAGAGGCTGGGGATTTCTGTTGATATAGCTCTGAGTGCAGAATCTGCTTATCAATATCTATCCAATACTTCCAACACAAGAGCATCGACACAATTGGCGATGATTCTTATAGATGAAGATATTTGGGACAAGAAAGTGGGTCTCAAGTTCCATCTTTTGTTTAAAGAGCACGTGGATAAAAGTGTGACAAATGTCCAGATGAATACTCCAAAGCTCTTTCTCTTGACAACCCCCAGTAGCTCCAATGAGCAAAATGAACTTAAATCTTCTGGTCATGTAAATAACATATTAAAAAAACCTCTTCAGTTAAATGTGTTAGTTAGTTGCTTCCGCGAAGCCTTTGGGATCGAGAAGAGGAATCAAGTAATTATTAAAAGACCATCTACTCTTAGGAATCTTCTGAAAGAAAAGCATATTTTGGTTGTGGATGACAATGCGGTGAACAGAATGGTGGCAGAAGGTGCCCTAAAGAAATATGGAGCAGTTGTAACTTGTGTAAAAAGTGGAAAGGATGCTGTGGCTCTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTAGAAAGTGGGGTGAATGCGAAAATTACATCTGGAGAAGTGTCAACTGAGGACAATAAAGTCCATTGGCACACGCCAATATTTGCCATGACGGCAGATTTAATTCAGGCTATGAATGAAGAGTGCGTGAAGTGTGGGATGGATGGTAGACTCAAATGTTATGATTTGCCAAAATCACTGAATGTGAATCCTGATGACTTTTCATCTCCTCCGAGATGGCTTATCGAAATCCTCTATCAGGGGTTTCGAGAC 3885 41.98 MWRGCSGGAGVFLKLSRCLLRMSLSCKFSTSNGKFPAGFKLKKAKEHLCLLNSTGKWKKKLLCLWIFAVVIVLSSWFSLRSNNVNSGTKQKTSNLFDEETRTLLRHFNVSKNQLQALASLLSESDRMSSIGCTNDFGSDTSQLDGIACALRLLYWEQDLHKQYVWVGESADSNFGQCPIRTEKIPENSDQLFSEDVTVPFATDLSVSLLSTGNQLCGKIIEQAGVLRYSLRKQWMNFCSLLIGCFWVLLGVMVFQKRSGFLVKLWTRIHPKPNQPLAHQQWVLLRRKQHQQVKDSPKGAGKWRKVLLRIFIVVGIIGSIWLFWFLNQTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQAMLFLFAICLVSPLLYNFYTIKTFGEYTERTSFERPLTSGVAYALKVNHSEREQFEMMHGWTIKKMETEDQTLVQDCDPENLEPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFRAAISRIAKVEDDYHKMMWLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSNQLDFAQTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAILDNVLSPFSLKSNDKGIELAVYVSDLVPEIVIGDPGRFRQIITHLVGNSVKFTHKKGHILISVHLADEVRGPVDFMDIVLRQGKYVVRDASNNSCTTFSGLPVVDRWKSWEDFKKFSGTDAVEEPKMIRILVTVEDTGIGIPQKAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGEISFLDTRRLQSDLGIVEFQGLRALIIDNSCIRAEVTRYHLQRLGISVDIALSAESAYQYLSNTSNTRASTQLAMILIDEDIWDKKVGLKFHLLFKEHVDKSVTNVQMNTPKLFLLTTPSSSNEQNELKSSGHVNNILKKPLQLNVLVSCFREAFGIEKRNQVIIKRPSTLRNLLKEKHILVVDDNAVNRMVAEGALKKYGAVVTCVKSGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVESGVNAKITSGEVSTEDNKVHWHTPIFAMTADLIQAMNEECVKCGMDGRLKCYDLPKSLNVNPDDFSSPPRWLIEILYQGFRD 1295
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 40370520 40381257 + Maker00000313 Lcy8g1364 640256
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1364 1295 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 667 746 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy8g1364 1295 Gene3D - 744 966 IPR036890 -
Lcy8g1364 1295 FunFam Histidine kinase 4 400 626 - -
Lcy8g1364 1295 Gene3D - 82 126 - -
Lcy8g1364 1295 Gene3D - 325 377 - -
Lcy8g1364 1295 CDD HisKA 680 741 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy8g1364 1295 SUPERFAMILY CheY-like 1141 1262 IPR011006 -
Lcy8g1364 1295 ProSiteProfiles Response regulatory domain profile. 988 1120 IPR001789 GO:0000160(InterPro)
Lcy8g1364 1295 SMART HKATPase_4 792 964 IPR003594 -
Lcy8g1364 1295 Pfam His Kinase A (phospho-acceptor) domain 680 745 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy8g1364 1295 Gene3D - 1127 1271 - -
Lcy8g1364 1295 ProSiteProfiles Response regulatory domain profile. 1144 1279 IPR001789 GO:0000160(InterPro)
Lcy8g1364 1295 FunFam Histidine kinase 4 652 743 - -
Lcy8g1364 1295 Pfam CHASE domain 402 592 IPR006189 -
Lcy8g1364 1295 Gene3D - 983 1126 - -
Lcy8g1364 1295 CDD HATPase_EvgS-ArcB-TorS-like 797 960 - -
Lcy8g1364 1295 PANTHER TWO-COMPONENT HISTIDINE KINASE 301 1260 IPR050956 -
Lcy8g1364 1295 Gene3D - 649 743 - -
Lcy8g1364 1295 ProSiteProfiles CHASE domain profile. 402 619 IPR006189 -
Lcy8g1364 1295 PRINTS Bacterial sensor protein C-terminal signature 948 961 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy8g1364 1295 PRINTS Bacterial sensor protein C-terminal signature 889 903 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy8g1364 1295 PRINTS Bacterial sensor protein C-terminal signature 907 917 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy8g1364 1295 PRINTS Bacterial sensor protein C-terminal signature 924 942 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lcy8g1364 1295 SMART CHASE_2 404 594 IPR006189 -
Lcy8g1364 1295 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 888 962 IPR003594 -
Lcy8g1364 1295 SMART HisKA_10 680 745 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy8g1364 1295 SMART REC_2 1143 1271 IPR001789 GO:0000160(InterPro)
Lcy8g1364 1295 CDD REC_hyHK_CKI1_RcsC-like 1145 1262 - -
Lcy8g1364 1295 SUPERFAMILY CheY-like 983 1120 IPR011006 -
Lcy8g1364 1295 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 734 960 IPR036890 -
Lcy8g1364 1295 Pfam Response regulator receiver domain 1145 1226 IPR001789 GO:0000160(InterPro)
Lcy8g1364 1295 Gene3D CHASE domain 401 626 IPR042240 -
Lcy8g1364 1295 ProSiteProfiles Histidine kinase domain profile. 687 964 IPR005467 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2314 Lcy-Chr6:47924324 Lcy8g1364 Lcy-Chr8:40370520 1.98E-23 dispersed
Lcy7g1375 Lcy-Chr7:20450681 Lcy8g1364 Lcy-Chr8:40370520 2.95E-306 dispersed
Lcy11g1336 Lcy-Chr11:37022952 Lcy8g1364 Lcy-Chr8:40370520 1.02E-06 transposed
Lcy3g1254 Lcy-Chr3:38292846 Lcy8g1364 Lcy-Chr8:40370520 0 transposed
Lcy4g0365 Lcy-Chr4:4591200 Lcy8g1364 Lcy-Chr8:40370520 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20520 None None None None Lcy TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1364 K14489 - csv:101221294 2175.21