Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1366 ATGTCGAAGAGACTATGTTATCAACCACTTCAAGGAGTGGATGCCTACTGTCTTTCCCAATTTCAATCTTTAGGTCGCCAATTATATTCCAGTGCTGGCAACCAAAGAGCCCAGTTCAATGTTCAAGACACCGGTGATCATTACTGCACTCTGGATTCGTCCTCGGGAAGCCATGGCTGTGCAACTCACAACTCGACATCAACCATCACTTTCTCACCCAATGGGAGTCCAGTATCACAACAGGATTCTCGTTCAAATCCTTCTGATCAGCATAATTCCCCTGACAATACGTATGGCTCCCCAGTAAGCGGATCCAGCATAACAGACGATATTAGTGACTTTAGGCACAAACTACGGGAATTGGAAACTGTGATGCTTGGCCCTGATTCTGATGTTATTGATAGTTTTGATAGTATCTACCAGGAGGGAACAGACAATCCAGAGATGGGAAGTTGGGGACAGGTGATGGATGCTATCACTAAAGGTAACTTAAAAAAGATCCTAATAACTTGTGCTAAAGCGGTATCAGATAATGATACTTTAATGGCACAATGGCTTATGGATGAATTGCGCAAGATGGTGTCGGTTCGTGGTGAACCGATGCAGAGGCTGGGAGCTTATATGTTGGAGGGGCTGGTTGCACGGTTAGCCTCCTCAGGCAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGTGCAGAGCTCCTCTCATATATGCACGTTCTTTATGAGGTTTGCCCGTATTTCAAATTCGGATACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTTCACATCATTGATTTCCAAATCTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCCGGTGGACCACCTCACATTCGTATAACTGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGTGGGCTAGATATCGTTGGGAAGAGGCTTTCCAAGTTAGCAAAGTTATTTAATGTTCCATTTGAGTTTCACTCTGCTGCCATTTCTGGCTGCGATGTTCAGCAAAAAAATCTGGGCATTCGACGAGGGGAGGCTTTAGCAGTTAACTTTGCCTTCATGCTACACCATATGCCAGATGAGAGCGTAAGCACCGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCCAACACAAACACTGCTGCATTCTATCCCCGGTTCATCGAAACGCTGGATTACTACAACGCAATGTTTGAATCAATCGACGTTACTCTTCCAAGACAGCACAAGGAGCGAATCAACATCGAGCAGCATTGTCTAGCCAGGGAAGTCGTCAACATACTAGCATGTGAAGGGGCTGAGAGAGTGGAACGACACGAGCTACTCGGAAAGTGGAGACTGCGATTCGCAATGGCAGGATTCACTCCTTACCCGTTAAGCTCTTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAAAGAGAAGGGGCTCTGTATCTAGGCTGGATGGATAGGGATTTGGTTGCTTCTTGTGCATGGAAGTGA 1605 45.3 MSKRLCYQPLQGVDAYCLSQFQSLGRQLYSSAGNQRAQFNVQDTGDHYCTLDSSSGSHGCATHNSTSTITFSPNGSPVSQQDSRSNPSDQHNSPDNTYGSPVSGSSITDDISDFRHKLRELETVMLGPDSDVIDSFDSIYQEGTDNPEMGSWGQVMDAITKGNLKKILITCAKAVSDNDTLMAQWLMDELRKMVSVRGEPMQRLGAYMLEGLVARLASSGSSIYKSLRCKEPASAELLSYMHVLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSAAISGCDVQQKNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGALYLGWMDRDLVASCAWK 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40399681 40401285 + Maker00000657 Lcy8g1366 640258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1366 534 Pfam GRAS domain family 164 534 IPR005202 -
Lcy8g1366 534 MobiDBLite consensus disorder prediction 66 107 - -
Lcy8g1366 534 ProSiteProfiles GRAS family profile. 155 534 IPR005202 -
Lcy8g1366 534 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 135 533 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0169 Lcy-Chr11:1863010 Lcy8g1366 Lcy-Chr8:40399681 3.38E-65 dispersed
Lcy12g0052 Lcy-Chr12:783955 Lcy8g1366 Lcy-Chr8:40399681 1.71E-74 dispersed
Lcy5g0199 Lcy-Chr5:1949717 Lcy8g1366 Lcy-Chr8:40399681 2.77E-70 dispersed
Lcy7g0679 Lcy-Chr7:6284297 Lcy8g1366 Lcy-Chr8:40399681 1.84E-62 dispersed
Lcy8g1366 Lcy-Chr8:40399681 Lcy9g1234 Lcy-Chr9:36817728 1.10E-169 dispersed
Lcy8g1366 Lcy-Chr8:40399681 Lcy6g1707 Lcy-Chr6:32744414 6.24E-222 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20521 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1366 K27748 - csv:101221914 1014.6