Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy8g1367 ATGCCAGCTGAAAATTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTTGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCGGTGAAGAAAGTTTATAGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAGGTCCGATTGAGAAATTTTAGTGGAGATCCAGTGTTCATCAACCGCTTGAGATCTGAGGTTCAGCTGCTGAGCACGTTAAACAACAAATATATCATTGTTTGTTACAGTGTTTGGAATGATGATGAGCGTAATACGTTGAATTTCATTACGGAGGTGTGCACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAGCAGGTACTCGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGATCTCAACTGCAGCAACATATTTGTCAATGGGAACATTGGCCAGGTTAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGAAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAGGAAGATTACACGGAGATGGTGGACATATACTCCTTCGCGATGTGTTTGCTCGAGATGGTTACAACGGAGATACCATACAGTGAATGTGATAGTGTTGCCAAGATATACAAGAAGGTGACAACTGGAATAAAGCCCCAAGCACTAAACAAAGTGACTGACGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCGAGGCCTTCCGCTTCTGAACTTCTCAAGGACCCTTTCTTTGATGAAGTCAGGGATGAAGATTCTGAACAGACTTATTAA 891 42.87 MPAENSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRNFSGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDERNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTTEIPYSECDSVAKIYKKVTTGIKPQALNKVTDDEVRAFIEKCIAQPRARPSASELLKDPFFDEVRDEDSEQTY 296
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 40408986 40411930 + Maker00001047 Lcy8g1367 640259
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy8g1367 296 CDD STKc_WNK 24 284 - -
Lcy8g1367 296 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 286 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lcy8g1367 296 SUPERFAMILY Protein kinase-like (PK-like) 19 285 IPR011009 -
Lcy8g1367 296 Gene3D Transferase(Phosphotransferase) domain 1 109 290 - -
Lcy8g1367 296 FunFam probable serine/threonine-protein kinase WNK9 109 290 - -
Lcy8g1367 296 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1367 296 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Lcy8g1367 296 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy8g1367 296 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1367 Lcy-Chr8:40408986 Lcy8g1692 Lcy-Chr8:43517851 1.34E-109 dispersed
Lcy8g1367 Lcy-Chr8:40408986 Lcy6g1698 Lcy-Chr6:32416849 4.36E-163 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66120 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy8g1367 K08867 - csv:101222153 592.423